diff --git a/README.md b/README.md index 99699c50f651e321632e4431030b47c2e7c06b57..fe3a94186a795eb748243dc54078001ec3699edc 100644 --- a/README.md +++ b/README.md @@ -201,19 +201,22 @@ For some labeling with small and extremely bright noise, the **enhance signal** **Research Engine** === -||**ORIGINAL PICTURE**|| +|**ORIGINAL PICTURE**||| |:------------------:|:---------------------:|:---------------------:| -|||| +|||| +|First the tissue is detected on all selected slices.| | | |**TISSUE DETECTION**|**PARTICLES DETECTION iteration 1**|**PARTICLES DETECTION iteration 2**| |`run("Gaussian Blur...", "sigma=20 slice");`|`run("Gaussian Blur...", "sigma=1 stack");`|`run("Gaussian Blur...", "sigma=1 stack");`| | ||| -||`run("Maximum...", "radius=5 stack");`|`run("Maximum...", "radius=5 stack");`| -| ||| -|`setAutoThreshold("Huang dark");`|`setAutoThreshold("MaxEntropy dark");`|`setAutoThreshold("MaxEntropy dark");`| -|||| -|`run("Analyze Particles...", "size=100000-Infinity pixel show=Nothing add slice");`|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`| -|||| -|**This shape is used to characterize the tissue-embed particles.**|**Removal of all unwanted particles.**|**Removal of all unwanted particles.**| +|`setAutoThreshold("Huang dark");`|`run("Maximum...", "radius=5 stack");`|`run("Maximum...", "radius=5 stack");`| +|||| +|`run("Analyze Particles...", "size=100000-Infinity pixel show=Nothing add slice");`|`setAutoThreshold("MaxEntropy dark");`|`setAutoThreshold("MaxEntropy dark");`| +|||| +|**This shape is used to characterize the<br>tissue-embed particles.**|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`| +|**Continue with particles detection ->**||| +||**Removal of all unwanted particles.**|**Removal of all unwanted particles.**| | |**When several slices, removal of duplicates of the same particle.**|**When several slices, removal of duplicates of the same particle.**| -||**RESULT ON 5 SLICES**|| -|||| +| |**Removal of all particles on the Original Picture**| | +||**Continue to iteration 2 ->**| | +|||**RESULT ON 5 SLICES**| +||||