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dchalopi
nextflow
Commits
57084d59
Commit
57084d59
authored
7 years ago
by
dchalopi
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Dockerfile trinity
parent
bc908f90
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src/docker_modules/Trinity/2.6.6/Dockerfile
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View file @
57084d59
FROM
ubuntu:18.04
MAINTAINER
Laurent Modolo
ENV
TRINITY_VERSION=2.6.6
ENV
TRINITY_CO="06f284a"
ENV
BOWTIE2_VERSION=2.3.4.1
ENV
PACKAGES bowtie2=${BOWTIE2_VERSION}* \
ENV
SALMON_VERSION=0.7.2
ENV
PACKAGES curl=7.58.0* \
ca-certificates=20180409
RUN
apt-get update
&&
\
apt-get
install
-y
--no-install-recommends
${
PACKAGES
}
&&
\
apt-get clean
RUN
curl
-k
-L
https://github.com/COMBINE-lab/salmon/releases/download/v
${
SALMON_VERSION
}
/Salmon-
${
SALMON_VERSION
}
_linux_x86_64.tar.gz
-o
Salmon-
${
SALMON_VERSION
}
_linux_x86_64.tar.gz
&&
\
tar
xzf Salmon-
${
SALMON_VERSION
}
_linux_x86_64.tar.gz
&&
\
mv
Salmon-
${
SALMON_VERSION
}
_linux_x86_64/bin/
*
/usr/bin/
&&
\
rm
-Rf
Salmon-
${
SALMON_VERSION
}*
RUN
wget https://github.com/gmarcais/Jellyfish/releases/download/v2.2.7/jellyfish-2.2.7.tar.gz
&&
\
tar
xvf jellyfish-2.2.7.tar.gz
&&
\
cd
jellyfish-2.2.7/
&&
\
./configure
&&
make
&&
make
install
RUN
git clone https://github.com/trinityrnaseq/trinityrnaseq.git
&&
\
cd
trinityrnaseq
&&
\
git checkout
$TRINITY_CO
&&
\
make
&&
make plugins
&&
\
make
install
&&
\
cd
../
&&
rm
-r
trinityrnaseq
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