diff --git a/src/docker_modules/Trinity/2.6.6/Dockerfile b/src/docker_modules/Trinity/2.6.6/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..8a559dd908767171054ebc349196f1069ded497d --- /dev/null +++ b/src/docker_modules/Trinity/2.6.6/Dockerfile @@ -0,0 +1,36 @@ +FROM ubuntu:18.04 +MAINTAINER Laurent Modolo + +ENV TRINITY_VERSION=2.6.6 +ENV TRINITY_CO="06f284a" +ENV BOWTIE2_VERSION=2.3.4.1 +ENV PACKAGES bowtie2=${BOWTIE2_VERSION}* \ +ENV SALMON_VERSION=0.7.2 +ENV PACKAGES curl=7.58.0* \ + ca-certificates=20180409 + + +RUN apt-get update && \ + apt-get install -y --no-install-recommends ${PACKAGES} && \ + apt-get clean + +RUN curl -k -L https://github.com/COMBINE-lab/salmon/releases/download/v${SALMON_VERSION}/Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz -o Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz && \ +tar xzf Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz && \ +mv Salmon-${SALMON_VERSION}_linux_x86_64/bin/* /usr/bin/ && \ +rm -Rf Salmon-${SALMON_VERSION}* + +RUN wget https://github.com/gmarcais/Jellyfish/releases/download/v2.2.7/jellyfish-2.2.7.tar.gz && \ +tar xvf jellyfish-2.2.7.tar.gz && \ +cd jellyfish-2.2.7/ && \ +./configure && make && make install + +RUN git clone https://github.com/trinityrnaseq/trinityrnaseq.git && \ + cd trinityrnaseq && \ + git checkout $TRINITY_CO && \ + make && make plugins && \ + make install && \ +cd ../ && rm -r trinityrnaseq + + + +