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Commit be4c3c35 authored by Ghislain Durif's avatar Ghislain Durif
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fix license information + fix some link in 1st chapter

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1 merge request!1Quarto refactor
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Learn basics of ssh connection in GNU/Linux
......
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Learn how to install programs in GNU/Linux
......
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Learn how to build virtual images or container of a system
......
......@@ -59,7 +59,7 @@ Objective: understand the relations between the different components of a comput
## As simple as a Turing machine ?
![universal_truing_machine](./img/universal_truing_machine.png){width=100%}
![Universal Truing Machine](./img/universal_truing_machine.png){width=100%}
- A tape divided into cells, one next to the other. Each cell contains a symbol from some finite alphabet.
- A head that can read and write symbols on the tape and move the tape left and right one (and only one) cell at a time.
......@@ -106,7 +106,7 @@ Disadvantages:
> The kernel provides the most basic level of control over all of the computer's hardware devices. It manages memory access for programs in the RAM, it determines which programs get access to which hardware resources, it sets up or resets the CPU's operating states for optimal operation at all times, and it organizes the data for long-term non-volatile storage with file systems on such media as disks, tapes, flash memory, etc.
[Kernel](./img/220px-Kernel_Layout.svg.png){width=100%}
![Kernel](./img/220px-Kernel_Layout.svg.png){width=100%}
---
......
......@@ -16,8 +16,6 @@ knitr::opts_chunk$set(comment = NA)
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
Objective: Start and connect to an appliance on the IFB cloud
Instead of working on your computer where you don't have an Unix-like OS or have limited right, we are going to use the [IFB (Institut Français de bio-informatique) Cloud]( https://biosphere.france-bioinformatique.fr/).
......
......@@ -16,9 +16,6 @@ knitr::opts_chunk$set(comment = NA)
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
Objective: learn to use basic terminal command
Congratulations you are now connected on your VM !
......
......@@ -16,8 +16,6 @@ knitr::opts_chunk$set(comment = NA)
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
Objective: Understand how files are organized in Unix
> On a UNIX system, everything is a file ; if something is not a file, it is a process.
......
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Understand how rights works in GNU/Linux
......
......@@ -12,9 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
## Unix Processes
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Understand how process works in GNU/Linux
......
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Understand function of streams and pipes in Unix systems
......
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Learn simple ways to work with text file in Unix
......
......@@ -12,7 +12,9 @@ knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)
```
[![cc_by_sa](./img/cc_by_sa.png)](http://creativecommons.org/licenses/by-sa/4.0/)
<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">
<img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" />
</a>
Objective: Learn basics of batch processing in GNU/Linux
......
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