dockerfile

FROM rocker/r-base:4.4.0

RUN apt-get -y update  && \
    apt-get -y install cmake libxml2-dev libcurl4-gnutls-dev

COPY HTRfit_2.0.9.tar.gz  /HTRfit_2.0.9.tar.gz

RUN R -e "install.packages(c('car', 'parallel', 'data.table', 'ggplot2', 'glmmTMB', 'gridExtra',  'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'svglite', 'memuse'))" 

RUN R -e "BiocManager::install('S4Vectors', update = FALSE)"

RUN apt-get -y install libssl-dev

RUN R -e "BiocManager::install('DESeq2', update = FALSE)" 

RUN R -e "install.packages('/HTRfit_2.0.9.tar.gz', repos = NULL,type='source')"

#RUN rm -fr /HTRfit_2.0.9.tar.gz