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Commit 9dcc4a1d authored by Arnaud Duvermy's avatar Arnaud Duvermy
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update dockerfile

Former-commit-id: 1549b3bf75ec4fb71ef377caac6fe27e36403183
Former-commit-id: 9f98b54fbab83883f4dfc4e352a28f11fc891127
Former-commit-id: ba7892dc963177ee0b0429f1e222314ddf80e1a4
parent ebfc5a0b
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FROM rocker/r-base:4.3.1
FROM rocker/r-base:4.4.0
RUN apt-get -y update && \
apt-get -y install cmake libxml2-dev libcurl4-gnutls-dev
COPY HTRfit_2.0.9.tar.gz /HTRfit_2.0.9.tar.gz
RUN R -e "install.packages(c('parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'car', 'svglite'))"
RUN R -e "install.packages(c('car', 'parallel', 'data.table', 'ggplot2', 'glmmTMB', 'gridExtra', 'magrittr', 'MASS', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager', 'svglite', 'memuse'))"
RUN R -e "BiocManager::install('S4Vectors', update = FALSE)"
RUN apt-get -y install libssl-dev
RUN R -e "BiocManager::install('DESeq2', update = FALSE)"
RUN R -e "install.packages('/HTRfit_2.0.9.tar.gz', repos = NULL, type='source')"
RUN R -e "install.packages('/HTRfit_2.0.9.tar.gz', repos = NULL,type='source')"
RUN rm -fr /HTRfit_2.0.9.tar.gz
#RUN rm -fr /HTRfit_2.0.9.tar.gz
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