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# CHANGES IN HTRfit VERSION 2.1
* Improved Documentation: Clearer and more comprehensive information on HTRfit functionalities and usage.
* Additional Metrics: Added RMSE for enhanced model evaluation.
* Additional plot: Violin plot to measure proximity between actual and estimate for random effects.
* Improved Flexibility: Ability to combine various genes behavior with `combine_mock()`
* User experience: More informative messages.
* R 4.4.0 Compatible: Fully supports the latest R version.
# CHANGES IN HTRfit VERSION 2.0.0
* Improved Documentation: Clearer and more comprehensive information on HTRfit functionalities and usage.
* Additional Metrics: Added PR curve, precision, recall, accuracy, and R2 for enhanced model evaluation.
* Reduced Dependencies: Streamlined installation by removing the need for plotROC.
# CHANGES IN HTRfit VERSION 1.0.2
* R files reorganization, log file enhancement and versioning
* R files have been restructured to enhance clarity.
* The log file location has been relocated to the R temporary directory.
* A bug that was causing issues with writing the 'group' information in log files during model update has been fixed.
* Fix NOTE "no visible binding for global variable" linked to ggplot2
* Fix bug with packageVersion("HTRfit")
# CHANGES IN HTRfit VERSION 1.0.1
* The metrics_plot function has been updated to display histograms instead of density plots.
* The identity plot's point shape has been modified, enhancing the visual clarity of comparisons between HTRfit and DESeq2 results.
* Similar to the identity plot, the dispersion plot also benefits from improved point shape, contributing to a more effective visual analysis.
* Add xlab/ylab to ROC plot
* The vignette section now includes a new topic, "About mixed model evaluation".
# CHANGES IN HTRfit VERSION 1.0.0
* End of core development, Ready for beta testing
* The functions, tests, and vignettes are fully functional and operational!
* To do: 1) conducting installation tests , 2) seeking out beta testers for further evaluation.