NEWS.md

# v1.0.0 : End of core development, Ready for beta testing

The functions, tests, and vignettes are fully functional and operational! 
To do: 
 - conducting installation tests  
 - seeking out beta testers for further evaluation.


# v1.0.1 : few enhancements

 - The metrics_plot function has been updated to display histograms instead of density plots.
 - The identity plot's point shape has been modified, enhancing the visual clarity of comparisons between HTRfit and DESeq2 results.
 - Similar to the identity plot, the dispersion plot also benefits from improved point shape, contributing to a more effective visual analysis.
 - Add xlab/ylab to ROC plot 
 - The vignette section now includes a new topic, "About mixed model evaluation".


# v1.0.2 : R files reorganization, log file enhancement and versioning

 - R files have been restructured to enhance clarity.
 - The log file location has been relocated to the R temporary directory.
 - A bug that was causing issues with writing the 'group' information in log files during model update has been fixed.
 - Fix NOTE "no visible binding for global variable" linked to ggplot2
 - Fix bug with packageVersion("HTRfit")


# v2.0.0 : Enhanced evaluation metrics

 - Improved Documentation: Clearer and more comprehensive information on HTRfit functionalities and usage.
 - Additional Metrics: Added PR curve, precision, recall, accuracy, and R2 for enhanced model evaluation.
 - Reduced Dependencies: Streamlined installation by removing the need for plotROC.