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Commit daeaab6a authored by Xavier Grand's avatar Xavier Grand
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RNAseq_XGR, modif idx_genome, pb with STAR, indexed genome not found

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...@@ -152,6 +152,7 @@ workflow { ...@@ -152,6 +152,7 @@ workflow {
Channel Channel
.of( idx_genome ) .of( idx_genome )
.set { genome_indexed_input } .set { genome_indexed_input }
genome_indexed_input.view()
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq) mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
htseq_count(mapping_withindex.out.bam, gtf_file) htseq_count(mapping_withindex.out.bam, gtf_file)
} }
......
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