modif arriba_fusion.nf, still in progress

src/arriba_fusion.nf

@@ -69,11 +69,11 @@ if (params.help || params.h) {
  ****************************************************************
 */
  
-params.fastq = ""
+params.fastq = "./data/fastq/*_{1,2}.fq*"
 params.bam = ""
-params.genome = ""
-params.gtf = ""
-params.index = ""
+params.genome = "/home/xavier/Data/Genome/hg19/Homo_sapiens.GRCh37.dna.primary_assembly.fa"
+params.gtf = "/home/xavier/Data/Genome/hg19/Homo_sapiens.GRCh37.87.gtf"
+params.index = "/home/xavier/Data/Genome/hg19/STAR"
 
 /* Params out */
 params.fastp_out = "02_fastp"

src/nextflow.config

@@ -83,14 +83,14 @@ profiles {
         cpus = 1
       }
       withLabel: big_mem_multi_cpus {
-        cpus = 8
+        cpus = 4
       }
       withLabel: small_mem_mono_cpus {
         cpus = 1
         memory = '2GB'
       }
       withLabel: small_mem_multi_cpus {
-        cpus = 8
+        cpus = 4
         memory = '2GB'
       }
       withLabel: mid_mem_mono_cpus {
@@ -98,7 +98,7 @@ profiles {
         memory = '8GB'
       }
       withLabel: mid_mem_multi_cpus {
-        cpus = 8
+        cpus = 4
         memory = '8GB'
       }
     }