diff --git a/src/arriba_fusion.nf b/src/arriba_fusion.nf index ea200ac3fc7eda266d3e00a78e3d93bcce5bcfe2..52b2f5c43a41b881e4f1a243036c31d143c1d793 100644 --- a/src/arriba_fusion.nf +++ b/src/arriba_fusion.nf @@ -69,11 +69,11 @@ if (params.help || params.h) { **************************************************************** */ -params.fastq = "" +params.fastq = "./data/fastq/*_{1,2}.fq*" params.bam = "" -params.genome = "" -params.gtf = "" -params.index = "" +params.genome = "/home/xavier/Data/Genome/hg19/Homo_sapiens.GRCh37.dna.primary_assembly.fa" +params.gtf = "/home/xavier/Data/Genome/hg19/Homo_sapiens.GRCh37.87.gtf" +params.index = "/home/xavier/Data/Genome/hg19/STAR" /* Params out */ params.fastp_out = "02_fastp" diff --git a/src/nextflow.config b/src/nextflow.config index 29f2a25e87cceac42aa48eb1077873d32a2701dd..7e61f1f9044b3e44749eb44c4c89252a5ada1a33 100644 --- a/src/nextflow.config +++ b/src/nextflow.config @@ -83,14 +83,14 @@ profiles { cpus = 1 } withLabel: big_mem_multi_cpus { - cpus = 8 + cpus = 4 } withLabel: small_mem_mono_cpus { cpus = 1 memory = '2GB' } withLabel: small_mem_multi_cpus { - cpus = 8 + cpus = 4 memory = '2GB' } withLabel: mid_mem_mono_cpus { @@ -98,7 +98,7 @@ profiles { memory = '8GB' } withLabel: mid_mem_multi_cpus { - cpus = 8 + cpus = 4 memory = '8GB' } }