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Commit a574ceb9 authored by Xavier Grand's avatar Xavier Grand
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Modif pipeline to use STAR indexed genome to RNAseq_XGR.nf

parent 0b0299a5
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...@@ -148,7 +148,7 @@ workflow { ...@@ -148,7 +148,7 @@ workflow {
htseq_count(mapping_fastq.out.bam, gtf_file) htseq_count(mapping_fastq.out.bam, gtf_file)
} }
else { else {
idx_genome = "${params.idx}/*" idx_genome = "${params.idx}"
Channel Channel
.fromPath( idx_genome ) .fromPath( idx_genome )
.ifEmpty { error "Cannot find idexed genome reference files" } .ifEmpty { error "Cannot find idexed genome reference files" }
......
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