From a574ceb946c9180cda8cfa0fb18554b9a09194b7 Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Mon, 25 Jul 2022 13:51:12 +0200
Subject: [PATCH] Modif pipeline to use STAR indexed genome to RNAseq_XGR.nf
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index e75a50f..6de262b 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -148,7 +148,7 @@ workflow {
htseq_count(mapping_fastq.out.bam, gtf_file)
}
else {
- idx_genome = "${params.idx}/*"
+ idx_genome = "${params.idx}"
Channel
.fromPath( idx_genome )
.ifEmpty { error "Cannot find idexed genome reference files" }
--
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