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Commit 4a34c96b authored by Xavier Grand's avatar Xavier Grand
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Modif RNAseq_XGR.nf to use STAR indexed genome

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......@@ -31,8 +31,8 @@ def helpMessage() {
References:
--fasta [path] Path to genome fasta file.
--genome [path] Path to STAR indexed genome. (To avoid the time consumming indexation of "STAR genome generate" step)
--gtf [path] Path to the gtf annotation file.
--idx [path] Path to the STAR indexed genome (optional). (If allready computed)
Help: Display this help message.
--help
......
......@@ -194,7 +194,7 @@ process mapping_withindex {
}
input:
tuple val(index_id), path(index)
path(index)
tuple val(reads_id), path(reads)
output:
......
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