diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf index 324154281c82cbf8d11c96bf285dde205ffe57de..2dc6169e4c2161e9f2f336c27f0176ec7aa1c9f3 100644 --- a/src/RNAseq_XGR.nf +++ b/src/RNAseq_XGR.nf @@ -31,8 +31,8 @@ def helpMessage() { References: --fasta [path] Path to genome fasta file. - --genome [path] Path to STAR indexed genome. (To avoid the time consumming indexation of "STAR genome generate" step) --gtf [path] Path to the gtf annotation file. + --idx [path] Path to the STAR indexed genome (optional). (If allready computed) Help: Display this help message. --help diff --git a/src/nf_modules/star/main_2.7.8a.nf b/src/nf_modules/star/main_2.7.8a.nf index 159e1396268b3369008942c77cb0ddcee9925fc5..7ee0ac3db8e073651e290d11f4ae4c751140dbb2 100644 --- a/src/nf_modules/star/main_2.7.8a.nf +++ b/src/nf_modules/star/main_2.7.8a.nf @@ -194,7 +194,7 @@ process mapping_withindex { } input: - tuple val(index_id), path(index) + path(index) tuple val(reads_id), path(reads) output: