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Commit 12433cdc authored by Xavier Grand's avatar Xavier Grand
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add STAR and HTseq to RNAseq_XGR.nf

parent 46561244
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......@@ -135,7 +135,7 @@ workflow {
if (params.idx == "") {
Channel
.fromPath( params.genome )
.fromPath( params.fasta )
.ifEmpty { error "Cannot find any files matching: ${params.genome}" }
.map{it -> [(it.baseName =~ /([^\.]*)/)[0][1], it]}
.set { genome_file }
......
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