From 12433cdc0f6c7db35e13a7811b068e6c61c81166 Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Mon, 25 Jul 2022 11:33:36 +0200
Subject: [PATCH] add STAR and HTseq to RNAseq_XGR.nf
---
src/RNAseq_XGR.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index ac2f732..ef6af65 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -135,7 +135,7 @@ workflow {
if (params.idx == "") {
Channel
- .fromPath( params.genome )
+ .fromPath( params.fasta )
.ifEmpty { error "Cannot find any files matching: ${params.genome}" }
.map{it -> [(it.baseName =~ /([^\.]*)/)[0][1], it]}
.set { genome_file }
--
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