src/find_interaction_cluster/community_figures/__main__.py: lazyparser contrain for output parameter removed + add a parameter sd_community

src/find_interaction_cluster/community_figures/fig_functions.py: Add a parameter sd_community to show or hide communities sd

src/nt_composition/{__main__.py, distance.py, make_nt_correlation}: add a parameter level to study exons but also genes

src/find_interaction_cluster/community_figures/fig_functions.py: display dots instead of bars in make_barplot function

src/find_interaction_cluster/community_figures/fig_functions.py: deletion of unused import and functions + creation of dic_com when the test type is permutation

src/find_interaction_cluster/community_figures/*.py: script that creates a barplot showing the frequency/value of a particular item in every community of genomic features (genes of exons) that are close in the nucleus

src/find_interaction_cluster/nt_and_community.py: modifications to add the control used for each community in every figure

src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: removing the duplicates in final file

src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: comparison of string scores between couples of genes that are in the same community (at dna level)

src/find_interaction_cluster/nt_and_community.py: fix create_and_save_ctrl_dataframe by deleting outfile parameter

src/find_interaction_cluster/nt_and_community.py: add functions for barplot creation and refactoring of get_stat_nt_communities functions

src/find_interaction_cluster/nt_and_community.py: change in output folder from sf_community_enrichment to community_enrichment

src/find_interaction_cluster/*.py: replace list parameters weights and global_weights by int paramet weight and global_weight

src/find_interaction_cluster/create_ppi_files.py: fix filter_most_overllaping_ppi to correct community size and nb_com-ppi columns

src/find_interaction_cluster/create_ppi_files.py: modification to call the new functions created in src/find_interaction_cluster/radomization_test_ppi.py

src/find_interaction_cluster/radomization_test_ppi.py: add 3 functions to check if the number communities that are enriched in common genes between dna and protein level is also enriched

src/find_interaction_cluster/create_ppi_files.py: scripts that check if communities of genes interacting at DNA level are more similar at protein level than randomly expected

creation of a file linking protein and the fasterDB gene id encoding them from a file containing ensembl! id for genes and their protein in hg19

modification of get_community_file function to be able to chose the subfolder in which we want to create file