Commits · a90c69e7ba4f46d3efe7d728c01807b22bbb6209 · LBMC / ReGArDS / ChIA-PET_network · GitLab

Snippets Groups Projects

Jan 12, 2021
- src/db_utils/config.py: add a test_files attribute for Config class · e470b4f3
  nfontrod authored 4 years ago
  
  e470b4f3
Oct 28, 2020
- src/db_utils/*.py: modifications to add a column region in cin_gene_frequency... · a0eb0659
  nfontrod authored 4 years ago
  a0eb0659
Sep 25, 2020
- db_utils/db_creation.py: change the data type of distance from varchar to int · 52f73b13
  alapendr authored 4 years ago
  
  52f73b13
- db_utils/interactions/features_interactions.py: removal of completely... · f6f97b98
  alapendr authored 4 years ago
  f6f97b98
Sep 24, 2020
- db_utils/interactions/features_interactions.py: replace distance (null) with 0... · 5ee057fc
  alapendr authored 4 years ago
  5ee057fc
- db_utils/db_creation.py: change distance data type from varchar to float · 560eab88
  alapendr authored 4 years ago
  
  560eab88
Sep 17, 2020
- db_utils/interactions/config_interactions.py: modifications to allow to add... · f84037e4
  alapendr authored 4 years ago
  f84037e4
- db_utils/db_creation.py: modifications to add the distance information in the... · c17457e6
  alapendr authored 4 years ago
  c17457e6
- features_interactions.py: modifications to add the distance between genes or... · 3a733e59
  alapendr authored 4 years ago
  3a733e59
Aug 04, 2020
- src/db_utils/populate_database.py: refactoring of 2 lines · 919ab7a9
  nfontrod authored 4 years ago
  
  919ab7a9
Jun 09, 2020
- get_fill_metadata.py: modify a mistake in the get_fill_metadata script · 3b5028cd
  alapendr authored 4 years ago
  
  3b5028cd
- db_creation.py: modify a mistake in the db creation script · d54709d3
  alapendr authored 4 years ago
  
  d54709d3
Apr 10, 2020
- features_interactions.py: update to automate on all files and to fill the database · 41d4bb08
  alapendr authored 5 years ago
  
  41d4bb08
- config_interactions.py: add couple_exon and couple_gene to store the final... · 1e7e1240
  alapendr authored 5 years ago
  1e7e1240
- config.py: add chia_pet_files · e1093f6c
  alapendr authored 5 years ago
  
  e1093f6c
- __main__.py: update to integrate the filling of cin_exon_interaction and... · c5f45776
  alapendr authored 5 years ago
  c5f45776
Apr 09, 2020
- db_creation.py: modify force as weight · cb667d1f
  alapendr authored 5 years ago
  
  cb667d1f
Apr 06, 2020
- features_interactions.py: update variables and comments · bad815c7
  alapendr authored 5 years ago
  
  bad815c7
Mar 27, 2020
- src/db_utils/interactions/features_interactions.py: mojor modifications to... · 4e4d827d
  nfontrod authored 5 years ago
  4e4d827d
Mar 26, 2020
- src/db_utils/interactions/features_interactions.py: Creation of a function... · 772b8999
  nfontrod authored 5 years ago
  772b8999
- src/db_utils/interactions/bedtools.py: creation of the required directory if... · 2904ac24
  nfontrod authored 5 years ago
  2904ac24
- interactions: initiation_2 · 7bac84b3
  alapendr authored 5 years ago
  
  7bac84b3
- interactions: initiation · efadea32
  alapendr authored 5 years ago
  
  efadea32
Mar 11, 2020
- src/db_utils/fill_splicing_lore_tables.py: update opening ase_event file · 5f61e237
  alapendr authored 5 years ago
  
  5f61e237
Mar 10, 2020
- src/db_utils/projects_metadata/get_fill_metadata.py: modification in... · 481eae5e
  nfontrod authored 5 years ago
  481eae5e
- src/db_utils/projects_metadata/get_fill_metadata.py: fix fill_projects_table... · c75b6ddf
  nfontrod authored 5 years ago
  c75b6ddf
- __main__.py: without # · a65da7f6
  alapendr authored 5 years ago
  
  a65da7f6
- get_fill_metadata.py: problems solving · c229c568
  alapendr authored 5 years ago
  
  c229c568
- __main__.py: update with the filling of the projects table 2 · 8fe9d7f8
  alapendr authored 5 years ago
  
  8fe9d7f8
Mar 09, 2020
- creation of the projects_metadata folder · 112e7a9d
  alapendr authored 5 years ago
  
  112e7a9d
- __main__.py: update with the filling of the projects table · b042e70e
  alapendr authored 5 years ago
  
  b042e70e
- requirements.txt: creation of requirements.txt and modification of README.md · 2878f4e6
  nfontrod authored 5 years ago
  
  2878f4e6
- db_creation.py: modify antiboby in antibody in the table cin_projects · c09cedd4
  alapendr authored 5 years ago
  
  c09cedd4
- src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py :... · 54555bf4
  nfontrod authored 5 years ago
  54555bf4
- src/db_utils/frequency_scripts/frequency_function.py: modification of... · 9f5e8774
  nfontrod authored 5 years ago
  9f5e8774
- src/db_utils/frequency_scripts/config_freq.py: modification of iupac_dic... · 49f7a4af
  nfontrod authored 5 years ago
  49f7a4af
- db_creation.py: update varchar numbers for projects table · db395d65
  alapendr authored 5 years ago
  
  db395d65
Mar 06, 2020
- src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: fix... · cd664ff4
  nfontrod authored 5 years ago
  cd664ff4
Mar 05, 2020
- src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: fix... · c4545f21
  nfontrod authored 5 years ago
  c4545f21
- src/db_utils/fill_exon_n_gene_table.py: fix get_genomic_region function · d2a976c9
  nfontrod authored 5 years ago
  
  d2a976c9