src/find_interaction_cluster/clip_figures/clip_analyser.py: change in add_regulation_column to display if the gene contains an exons regulated by a splicing factor rather than the proportion of regulated exon inside each gene

src/download_encode_eclip/*.py: creation of a module used to download all the eclip data (on hg19) from Encode

src/misc/: script that creates a table indicating the number of splicing lore, chia-pet and clip project made on each cell line

src/find_interaction_cluster/community_figures/fig_functions.py: change in lm_maker_summary function to avoid creation of a temp file

src/find_interaction_cluster/community_figures/fig_functions.py: change de offset between community_size and community_data axis

src/find_interaction_cluster/clip_figures/clip_analyser.py: deletion of files=[files[0]] in clip_folder_analysis function

src/find_interaction_cluster/community_figures/fig_functions.py: handles community_data column + fix logit test

src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: fix update_composition_group function

src/find_interaction_cluster/clip_figures/__main__.py: add 3 new parameters: display_size, community_file and ps

src/find_interaction_cluster/clip_figures/clip_analyser.py: add 3 new parameters: display_size, community_file and ps

src/find_interaction_cluster/nt_and_community.py: add 2 new parameters to multiple_nt_lm_launcher: display_size and community_file + creation of launcher_community_file function

src/find_interaction_cluster/config.py: get_community -> get_communities_basefile and creation of a new get_community function

src/find_interaction_cluster/community_figures/fig_functions.py: change in lm_maker_summary to handle logistic regression

src/find_interaction_cluster/community_figures/*.py: add a paramter display_size to display the size of every community

src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: fix create_figure_4_clip_table function

src/find_interaction_cluster/clip_figures/clip_compo_launcher.py: add launcher call at the end of the file

src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: launch create_multiple_figures for every clip file

src/find_interaction_cluster/clip_figures/clip_compo_*: creation of a script to analyse the nucleotide composition of communities enrichied or impoverished in peak density from clip data

src/find_interaction_cluster/community_figures/fig_functions.py: add reg-adj column in the final file

src/find_interaction_cluster/clip_figures/*.py: creation of a module to produce community figures from CLIP files

src/find_interaction_cluster/community_figures/fig_functions.py: closing figures after their creation