Commits · 4e1e57415767b487befa559153479e1e16bb40b8 · LBMC / ReGArDS / ChIA-PET_network · GitLab

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Nov 23, 2020
- src/find_interaction_cluster/nt_and_community.py: change in output folder from... · 4e1e5741
  nfontrod authored 4 years ago
  4e1e5741
- src/find_interaction_cluster/nt_and_community.py: add permutations tests · aacaf00f
  nfontrod authored 4 years ago
  
  aacaf00f
- src/find_interaction_cluster/nt_and_community.py: modification of multiple_nt_lmm_launcher launcher · 10a59086
  nfontrod authored 4 years ago
  
  10a59086
Nov 20, 2020
- src/find_interaction_cluster/*.py: replace list parameters weights and... · f05e0585
  nfontrod authored 4 years ago
  f05e0585
Nov 19, 2020
- src/find_interaction_cluster/create_ppi_files.py: fix... · a08f96a4
  nfontrod authored 4 years ago
  a08f96a4
Nov 17, 2020
- src/find_interaction_cluster/create_ppi_files.py: modification to call the new... · fd031d72
  nfontrod authored 4 years ago
  fd031d72
- src/find_interaction_cluster/radomization_test_ppi.py: add 3 functions to... · 93caebe1
  nfontrod authored 4 years ago
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- src/find_interaction_cluster/__main__.py: script that launches ppi interaction · dffdc190
  nfontrod authored 4 years ago
  
  dffdc190
- src/find_interaction_cluster/create_ppi_files.py: scripts that check if... · ddabfd83
  nfontrod authored 4 years ago
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- src/find_interaction_cluster/radomization_test_ppi.py: function to perform randomization tests · 870bfbd7
  nfontrod authored 4 years ago
  
  870bfbd7
Nov 16, 2020
- creation of a file linking protein and the fasterDB gene id encoding them from... · 2eac9baa
  nfontrod authored 4 years ago
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Nov 06, 2020
- modification of get_community_file function to be able to chose the subfolder... · cb228b23
  nfontrod authored 4 years ago
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Oct 29, 2020
- src/find_interaction_cluster/__main__.py: add a region parameter · e27b2365
  nfontrod authored 4 years ago
  
  e27b2365
- src/find_interaction_cluster/nt_and_community.py: add a region parameter · c2cfe070
  nfontrod authored 4 years ago
  
  c2cfe070
- src/find_interaction_cluster/ppi_scripts/*.py: scripts to create a file... · 011bb626
  nfontrod authored 4 years ago
  011bb626
- src/nt_composition/make_nt_correlation.py: add a distance parameter into... · 79bc5594
  nfontrod authored 4 years ago
  79bc5594
Oct 28, 2020
- src/db_utils/*.py: modifications to add a column region in cin_gene_frequency... · a0eb0659
  nfontrod authored 4 years ago
  a0eb0659
- src/nt_composition/make_nt_correlation.py: modification of... · 97b8d434
  nfontrod authored 4 years ago
  97b8d434
Oct 27, 2020
- src/find_interaction_cluster/nt_and_community.py: add a script allowing to... · 263f00e6
  nfontrod authored 4 years ago
  263f00e6
Oct 26, 2020
- src/find_interaction_cluster/*.py: add a paramter feature · c0104bd4
  nfontrod authored 4 years ago
  
  c0104bd4
Sep 25, 2020
- db_utils/db_creation.py: change the data type of distance from varchar to int · 52f73b13
  alapendr authored 4 years ago
  
  52f73b13
- db_utils/interactions/features_interactions.py: removal of completely... · f6f97b98
  alapendr authored 4 years ago
  f6f97b98
Sep 24, 2020
- db_utils/interactions/features_interactions.py: replace distance (null) with 0... · 5ee057fc
  alapendr authored 4 years ago
  5ee057fc
- db_utils/db_creation.py: change distance data type from varchar to float · 560eab88
  alapendr authored 4 years ago
  
  560eab88
Sep 17, 2020
- db_utils/interactions/config_interactions.py: modifications to allow to add... · f84037e4
  alapendr authored 4 years ago
  f84037e4
- db_utils/db_creation.py: modifications to add the distance information in the... · c17457e6
  alapendr authored 4 years ago
  c17457e6
- features_interactions.py: modifications to add the distance between genes or... · 3a733e59
  alapendr authored 4 years ago
  3a733e59
Aug 07, 2020
- src/find_interaction_cluster/__main__.py: add multiple_nt_lmm_launcher in launcher · 2578a449
  nfontrod authored 4 years ago
  
  2578a449
- src/find_interaction_cluster/nt_and_community.py: creation of a script to... · f4f9f920
  nfontrod authored 4 years ago
  f4f9f920
- src/find_interaction_cluster/sf_and_communities.py: creation of... · efbd8f90
  nfontrod authored 4 years ago
  efbd8f90
Aug 04, 2020
- src/nt_composition: addition of a parameter inter_chr to select only inter_chromosomal interaction · 114270b4
  nfontrod authored 4 years ago
  
  114270b4
- src/find_interaction_cluster/__main__.py: uncomment of some lines · 7b0f9995
  nfontrod authored 4 years ago
  
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- src/db_utils/populate_database.py: refactoring of 2 lines · 919ab7a9
  nfontrod authored 4 years ago
  
  919ab7a9
Jul 15, 2020
- src/find_interaction_cluster/sf_and_communities.py: fix get_stat4communities... · 0396538f
  nfontrod authored 4 years ago
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- move get_community from src/find_interaction_cluster/community_finder.py to... · 55ea1762
  nfontrod authored 4 years ago
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- src/nt_composition/__main__.py: addition of parameter community_size to limit... · 72caf926
  nfontrod authored 4 years ago
  72caf926
- src/nt_composition/make_nt_correlation.py: major modification corresponding to... · 1db24ea1
  nfontrod authored 4 years ago
  1db24ea1
- modification of create fiure to don't recompute figure if the result file is present · cd4eef50
  nfontrod authored 4 years ago
  
  cd4eef50
- src/nt_composition/distance.py: modification of create_all_distance_figures to... · 56c28838
  nfontrod authored 4 years ago
  56c28838
- src/nt_composition/config.py: add the parameter community_size in... · 4e3f9b0f
  nfontrod authored 4 years ago
  4e3f9b0f