- Mar 04, 2020
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alapendr authored
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alapendr authored
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nfontrod authored
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nfontrod authored
src/db_utils/fill_splicing_lore_tables.py, src/db_utils/__main__.py: creation of fill_splicing_lore_tables.py that fills cin_ase_event and cin_project_splicing_lore tables
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nfontrod authored
src/db_utils/populate_database.py - src/db_utils/config.py: modification of check_table_name, it now checks if the table name given exists in the database, not if it presents in Config.tables (so, this last variable was removed)
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alapendr authored
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alapendr authored
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nfontrod authored
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nfontrod authored
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- Mar 03, 2020
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alapendr authored
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nfontrod authored
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nfontrod authored
src/db_utils/creation_of_exon_table.py: major modification, this script will create and fill the cin_exon and cin_gene table of the new database model
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nfontrod authored
src/db_utils/populate_database.py: creation of populate_df function (and other functions to lower code duplication) that fill the database directly with a pandas dataframe
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nfontrod authored
src/db_utils/config.py: modification of prefixes gin to cin in Config.table + creation of Config.bed_exon and Config.bed_gene variable
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/db_utils/config.py: modification of Config.db_file and Config.output + deletion of LOGGING_CONFIG, logging_def and LoggingLevelError
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nfontrod authored
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alapendr authored
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alapendr authored
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alapendr authored
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alapendr authored
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