Commits · 0e81388203c87e887d50939ba8e92adfad3dddce · LBMC / ReGArDS / ChIA-PET_network · GitLab

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Jan 04, 2021
- src/find_interaction_cluster/nt_and_community.py: usage of community_figure new module · 0e813882
  nfontrod authored 4 years ago
  
  0e813882
- src/find_interaction_cluster/community_figures/fig_functions.py: fix lm_with_ctrl function · a7cf3b21
  nfontrod authored 4 years ago
  
  a7cf3b21
- src/find_interaction_cluster/community_figures/fig_functions.py: fix get_permutation_mean function · 7a8fc9fb
  nfontrod authored 4 years ago
  
  7a8fc9fb
- src/find_interaction_cluster/community_figures/fig_functions.py: deletion of... · 661d27aa
  nfontrod authored 4 years ago
  661d27aa
- src/find_interaction_cluster/community_figures/*.py: script that creates a... · 00ca1723
  nfontrod authored 4 years ago
  00ca1723
- src/find_interaction_cluster/nt_and_community.py: fix make_barplot_perm function · 74856aba
  nfontrod authored 4 years ago
  
  74856aba
Dec 17, 2020
- src/find_interaction_cluster/nt_and_community.py: fix the nucleotide list of interest · e953b5c6
  nfontrod authored 4 years ago
  
  e953b5c6
Dec 16, 2020
- src/find_interaction_cluster/nt_and_community.py: modifications to add the... · d037363c
  nfontrod authored 4 years ago
  d037363c
Nov 27, 2020
- src/find_interaction_cluster/__main__.py: modifications to use the adapt functions · 50acb5a3
  nfontrod authored 4 years ago
  
  50acb5a3
- src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: removing the... · 9a838f6c
  nfontrod authored 4 years ago
  9a838f6c
- src/find_interaction_cluster/nt_and_community.py: replace lmm name by lm · 062b1e37
  nfontrod authored 4 years ago
  
  062b1e37
Nov 26, 2020
- src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: comparison of... · 7b9d52ff
  nfontrod authored 4 years ago
  7b9d52ff
Nov 25, 2020
- src/find_interaction_cluster/nt_and_community.py: fix... · 523b6c7e
  nfontrod authored 4 years ago
  523b6c7e
- src/find_interaction_cluster/nt_and_community.py: fix main function to work on all components · e3e8f1ef
  nfontrod authored 4 years ago
  
  e3e8f1ef
- src/find_interaction_cluster/__main__.py: add paramter component_type · e533e08c
  nfontrod authored 4 years ago
  
  e533e08c
- src/find_interaction_cluster/nt_and_community.py: works now with dnt and aa · bd24e056
  nfontrod authored 4 years ago
  
  bd24e056
Nov 24, 2020
- src/find_interaction_cluster/nt_and_community.py: error bar on barplots · a520d7c7
  nfontrod authored 4 years ago
  
  a520d7c7
- src/find_interaction_cluster/nt_and_community.py: add functions for barplot... · c1ec2983
  nfontrod authored 4 years ago
  c1ec2983
Nov 23, 2020
- src/find_interaction_cluster/nt_and_community.py: change in output folder from... · 4e1e5741
  nfontrod authored 4 years ago
  4e1e5741
- src/find_interaction_cluster/nt_and_community.py: add permutations tests · aacaf00f
  nfontrod authored 4 years ago
  
  aacaf00f
- src/find_interaction_cluster/nt_and_community.py: modification of multiple_nt_lmm_launcher launcher · 10a59086
  nfontrod authored 4 years ago
  
  10a59086
Nov 20, 2020
- src/find_interaction_cluster/*.py: replace list parameters weights and... · f05e0585
  nfontrod authored 4 years ago
  f05e0585
Nov 19, 2020
- src/find_interaction_cluster/create_ppi_files.py: fix... · a08f96a4
  nfontrod authored 4 years ago
  a08f96a4
Nov 17, 2020
- src/find_interaction_cluster/create_ppi_files.py: modification to call the new... · fd031d72
  nfontrod authored 4 years ago
  fd031d72
- src/find_interaction_cluster/radomization_test_ppi.py: add 3 functions to... · 93caebe1
  nfontrod authored 4 years ago
  93caebe1
- src/find_interaction_cluster/__main__.py: script that launches ppi interaction · dffdc190
  nfontrod authored 4 years ago
  
  dffdc190
- src/find_interaction_cluster/create_ppi_files.py: scripts that check if... · ddabfd83
  nfontrod authored 4 years ago
  ddabfd83
- src/find_interaction_cluster/radomization_test_ppi.py: function to perform randomization tests · 870bfbd7
  nfontrod authored 4 years ago
  
  870bfbd7
Nov 16, 2020
- creation of a file linking protein and the fasterDB gene id encoding them from... · 2eac9baa
  nfontrod authored 4 years ago
  2eac9baa
Nov 06, 2020
- modification of get_community_file function to be able to chose the subfolder... · cb228b23
  nfontrod authored 4 years ago
  cb228b23
Oct 29, 2020
- src/find_interaction_cluster/__main__.py: add a region parameter · e27b2365
  nfontrod authored 4 years ago
  
  e27b2365
- src/find_interaction_cluster/nt_and_community.py: add a region parameter · c2cfe070
  nfontrod authored 4 years ago
  
  c2cfe070
- src/find_interaction_cluster/ppi_scripts/*.py: scripts to create a file... · 011bb626
  nfontrod authored 4 years ago
  011bb626
Oct 27, 2020
- src/find_interaction_cluster/nt_and_community.py: add a script allowing to... · 263f00e6
  nfontrod authored 4 years ago
  263f00e6
Oct 26, 2020
- src/find_interaction_cluster/*.py: add a paramter feature · c0104bd4
  nfontrod authored 4 years ago
  
  c0104bd4
Aug 07, 2020
- src/find_interaction_cluster/__main__.py: add multiple_nt_lmm_launcher in launcher · 2578a449
  nfontrod authored 4 years ago
  
  2578a449
- src/find_interaction_cluster/nt_and_community.py: creation of a script to... · f4f9f920
  nfontrod authored 4 years ago
  f4f9f920
- src/find_interaction_cluster/sf_and_communities.py: creation of... · efbd8f90
  nfontrod authored 4 years ago
  efbd8f90
Aug 04, 2020
- src/find_interaction_cluster/__main__.py: uncomment of some lines · 7b0f9995
  nfontrod authored 4 years ago
  
  7b0f9995
- src/db_utils/populate_database.py: refactoring of 2 lines · 919ab7a9
  nfontrod authored 4 years ago
  
  919ab7a9