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Commit cab687f0 authored by nfontrod's avatar nfontrod
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src/db_utils/__main__.py: filling of two new tables: cin_de_event and cin_project_tf

parent a4b7f941
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...@@ -16,6 +16,7 @@ from .frequency_scripts.create_n_fill_exon_frequency_file import \ ...@@ -16,6 +16,7 @@ from .frequency_scripts.create_n_fill_exon_frequency_file import \
import logging import logging
from .projects_metadata.get_fill_metadata import fill_projects_table from .projects_metadata.get_fill_metadata import fill_projects_table
import subprocess import subprocess
from .fill_TF_tables import fill_tf_data
def launch_features_interactions(opt: str): def launch_features_interactions(opt: str):
...@@ -46,6 +47,8 @@ def launcher(logging_level: str = "INFO"): ...@@ -46,6 +47,8 @@ def launcher(logging_level: str = "INFO"):
main_fill_exon_n_gene('DISABLE') main_fill_exon_n_gene('DISABLE')
logging.info('Filling splicing lore tables') logging.info('Filling splicing lore tables')
fill_splicing_lore_data('DISABLE') fill_splicing_lore_data('DISABLE')
logging.info('Filling transcription factor tables')
fill_tf_data('DISABLE')
logging.info('Filling frequency tables') logging.info('Filling frequency tables')
fill_frequency_tables(Config.cpu, 'DISABLE') fill_frequency_tables(Config.cpu, 'DISABLE')
logging.info('Filling projects table') logging.info('Filling projects table')
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