tad_to_communities/config.py: initial commit

src/db_utils/projects_metadata/config_metadata_chiapet.py → src/db_utils/projects_metadata/config_metadata.py

@@ -14,7 +14,7 @@ class Config_metadata:
     """
     Configuration variable for this subfolder
     """
-    geo_id_file = Config.data / 'metadata_files' / 'chia_pet_list_GSM.txt'
+    geo_id_file = Config.data / 'metadata_files' / 'dataset_list_GSM.txt'
     output = Config.results / 'projects_metadata'
-    metadata_file = Config.data / 'metadata_files' / 'chia_pet_list.csv'
-    outfile = 'chia_pet_projects'
+    metadata_file = Config.data / 'metadata_files' / 'dataset_list.csv'
+    outfile = 'datasets'

src/find_interaction_cluster/tad_to_communities/config.py

+#!/usr/bin/env python3
+
+# -*- coding: UTF-8 -*-
+
+
+"""
+Description: Variables for the tad_to_communities directory
+"""
+
+
+from pathlib import Path
+
+
+class Config:
+    """
+    Variables for the tad_to_communities directory
+    """
+    data = Path(__file__).parents[3] / "data"
+    results = Path(__file__).parents[3] / "results"
+    tad = data / "figures_files" / "tad_to_communities" / "tad_annotations"
+    target_gene = data / "bed" / "gene.bed"
+    intersect_tad_gene = results / "figures" / "tad_to_communities" / \
+        "intersect_tad_gene"
+    tad_communities = results / "figures" / "tad_to_communities" / \
+        "tad_communities"