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Commit b8a9512f authored by nfontrod's avatar nfontrod
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src/find_interaction_cluster/clip_figures/config.py: add communities and communities_name variable

parent 8100dae6
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...@@ -8,8 +8,8 @@ this submodule work ...@@ -8,8 +8,8 @@ this submodule work
""" """
from pathlib import Path
from ..config import ConfigGraph, Config from ..config import ConfigGraph, Config
from ...hic_TAD_caller.config_tad_hic import ConfigHiC as CHic
class ConfigClip: class ConfigClip:
...@@ -25,9 +25,14 @@ class ConfigClip: ...@@ -25,9 +25,14 @@ class ConfigClip:
test_clip_file = Config.tests_files / "SF_test_bar.txt" test_clip_file = Config.tests_files / "SF_test_bar.txt"
bed = Config.data / "bed" bed = Config.data / "bed"
# Location of the community files # Location of the community files
communities = [bed / "communities_HiC_TADs_Stein-MCF7-WT.txt", communities = [
bed / "communities_K562_Lieberman-raw_TADs.txt", bed / "communities_HiC_TADs_Stein-MCF7-WT.txt",
bed / "communities_ISO_Costantini.lifted.txt", bed / "communities_K562_Lieberman-raw_TADs.txt",
""] bed / "communities_ISO_Costantini.lifted.txt",
"",
CHic.hic_tad_caller / "communities_K652_4DN_4DNFIJBJ6QVH_hg19.bed",
CHic.hic_tad_caller / "communities_K562_External_4DNFITUOMFUQ_hg19.bed"
]
# Name of the community files # Name of the community files
communities_name = ["TAD_MCF7", "TAD_K562", "Isochores", ""] communities_name = ["TAD_MCF7", "TAD_K562", "Isochores", "",
\ No newline at end of file "TAD_HIC_K562_4DN", "TAD_HIC_K562_External"]
\ No newline at end of file
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