diff --git a/src/find_interaction_cluster/clip_figures/config.py b/src/find_interaction_cluster/clip_figures/config.py index ef1a46746d2eecb9f654338a232a1083aa1895d8..fe6a4e804dc9339e147da9ac0c3b9f79a10f08ad 100644 --- a/src/find_interaction_cluster/clip_figures/config.py +++ b/src/find_interaction_cluster/clip_figures/config.py @@ -8,8 +8,8 @@ this submodule work """ -from pathlib import Path from ..config import ConfigGraph, Config +from ...hic_TAD_caller.config_tad_hic import ConfigHiC as CHic class ConfigClip: @@ -25,9 +25,14 @@ class ConfigClip: test_clip_file = Config.tests_files / "SF_test_bar.txt" bed = Config.data / "bed" # Location of the community files - communities = [bed / "communities_HiC_TADs_Stein-MCF7-WT.txt", - bed / "communities_K562_Lieberman-raw_TADs.txt", - bed / "communities_ISO_Costantini.lifted.txt", - ""] + communities = [ + bed / "communities_HiC_TADs_Stein-MCF7-WT.txt", + bed / "communities_K562_Lieberman-raw_TADs.txt", + bed / "communities_ISO_Costantini.lifted.txt", + "", + CHic.hic_tad_caller / "communities_K652_4DN_4DNFIJBJ6QVH_hg19.bed", + CHic.hic_tad_caller / "communities_K562_External_4DNFITUOMFUQ_hg19.bed" + ] # Name of the community files - communities_name = ["TAD_MCF7", "TAD_K562", "Isochores", ""] \ No newline at end of file + communities_name = ["TAD_MCF7", "TAD_K562", "Isochores", "", + "TAD_HIC_K562_4DN", "TAD_HIC_K562_External"] \ No newline at end of file