src/find_interaction_cluster/clip_figures/__main__.py: add sl_reg parameter

src/find_interaction_cluster/clip_figures/__main__.py

@@ -19,9 +19,8 @@ def clip_analysis(clip_folder: str, weight: int = -1,
                   project: str = "GSM1018963_GSM1018964",
                   test_type: str = "permutation", iteration: int = 10000,
                   display_size: bool=False,
-                  community_file: str = "",
-                  ps: int = 1,
-                  logging_level: str = "DEBUG") -> None:
+                  community_file: str = "", sl_reg: bool = False,
+                  ps: int = 1, logging_level: str = "DEBUG") -> None:
     """
     Create the final figure.
 
@@ -43,6 +42,8 @@ def clip_analysis(clip_folder: str, weight: int = -1,
     :param community_file: A file containing custom communities. If \
     it equals to '' then weight, global weight and same genes parameter are \
     used to find the community files computed with ChIA-PET data.
+    :param sl_reg: True to display the FaRLine regulation of the \
+    same factor, False to not display it.
     :param ps: The number of processes to create (default 1)
     :param logging_level: The level of data to display (default 'DISABLE')
     :return: The final dataframe that can be used to create clip figures
@@ -57,7 +58,8 @@ def clip_analysis(clip_folder: str, weight: int = -1,
         raise NotADirectoryError(f"{clip_folder} is not an existing directory")
     clip_folder_analysis(clip_folder, project, weight, global_weight,
                          same_gene, feature, test_type, iteration,
-                         display_size, community_file, ps, logging_level)
+                         display_size, community_file, sl_reg, ps,
+                         logging_level)
 
 
 clip_analysis()
\ No newline at end of file