From 39e627ae1420f177d2d49fce546544d27a378166 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Wed, 20 Jan 2021 10:56:31 +0100
Subject: [PATCH] src/find_interaction_cluster/clip_figures/__main__.py: add
sl_reg parameter
---
src/find_interaction_cluster/clip_figures/__main__.py | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/src/find_interaction_cluster/clip_figures/__main__.py b/src/find_interaction_cluster/clip_figures/__main__.py
index 12267449..e3c9fffc 100644
--- a/src/find_interaction_cluster/clip_figures/__main__.py
+++ b/src/find_interaction_cluster/clip_figures/__main__.py
@@ -19,9 +19,8 @@ def clip_analysis(clip_folder: str, weight: int = -1,
project: str = "GSM1018963_GSM1018964",
test_type: str = "permutation", iteration: int = 10000,
display_size: bool=False,
- community_file: str = "",
- ps: int = 1,
- logging_level: str = "DEBUG") -> None:
+ community_file: str = "", sl_reg: bool = False,
+ ps: int = 1, logging_level: str = "DEBUG") -> None:
"""
Create the final figure.
@@ -43,6 +42,8 @@ def clip_analysis(clip_folder: str, weight: int = -1,
:param community_file: A file containing custom communities. If \
it equals to '' then weight, global weight and same genes parameter are \
used to find the community files computed with ChIA-PET data.
+ :param sl_reg: True to display the FaRLine regulation of the \
+ same factor, False to not display it.
:param ps: The number of processes to create (default 1)
:param logging_level: The level of data to display (default 'DISABLE')
:return: The final dataframe that can be used to create clip figures
@@ -57,7 +58,8 @@ def clip_analysis(clip_folder: str, weight: int = -1,
raise NotADirectoryError(f"{clip_folder} is not an existing directory")
clip_folder_analysis(clip_folder, project, weight, global_weight,
same_gene, feature, test_type, iteration,
- display_size, community_file, ps, logging_level)
+ display_size, community_file, sl_reg, ps,
+ logging_level)
clip_analysis()
\ No newline at end of file
--
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