Commits · c991d467c542f1838d539053602fb3a0d9d4ef46 · LBMC / ReGArDS / Projects_Analyzes / bigWig_visu · GitLab

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Jan 12, 2021
- src/commands.sh: executed commands · c991d467
  nfontrod authored 4 years ago
  
  c991d467
Jan 11, 2021
- .gitlab-ci.yml: install loguru before running tests · aa8306b0
  nfontrod authored 4 years ago
  
  aa8306b0
- src/bed_handler/filter_bed.py: add an option keep to recover every other genes... · 2a094c95
  nfontrod authored 4 years ago
  2a094c95
- src/visu/figure_maker.py: add a warning message if some bed feature cannot be reported · c22ad3fd
  nfontrod authored 4 years ago
  
  c22ad3fd
Jan 08, 2021
- src/visu/figure_maker.py: fix inspect_bigwig_regions to make it work with no environment · 337afeeb
  nfontrod authored 4 years ago
  
  337afeeb
Jan 07, 2021
- src/bed_handler/bed_resize.py: add a parameter type · bb8ce1ba
  nfontrod authored 4 years ago
  
  bb8ce1ba
Dec 18, 2020
- src/bed_handler/bed_resize.py: allow to resize the bed file · 1144c187
  nfontrod authored 4 years ago
  
  1144c187
Dec 03, 2020
- src/bed_handler/get_other_exon_in_same_gene.py: modication of outpout file... · a5e8bfbb
  nfontrod authored 4 years ago
  a5e8bfbb
- src/bed_handler/select_regulated_near_ctcf_exons.py: creation of bed file with... · e40ca2ed
  nfontrod authored 4 years ago
  e40ca2ed
- figure_maker.py: fix create_df_summary for barplot · 53d79600
  nfontrod authored 4 years ago
  
  53d79600
Dec 01, 2020
- src/bed_handler/config.py: add exons_vs_ctcf in BedConfig · 3510e8c8
  nfontrod authored 4 years ago
  
  3510e8c8
- src/bed_handler/get_other_exon_in_same_gene.py: From a list of exons get the... · 52d4c43f
  nfontrod authored 4 years ago
  52d4c43f
Nov 30, 2020
- .gitlab-ci.yml: update · 01f7fc8e
  nfontrod authored 4 years ago
  
  01f7fc8e
Nov 20, 2020
- .gitlab-ci.yml: update token · 7902326b
  nfontrod authored 4 years ago
  
  7902326b
- .gitlab-ci.yml: change token · a3e85839
  nfontrod authored 4 years ago
  
  a3e85839
- .gitlab-ci.yml · d12e4497
  nfontrod authored 4 years ago
  
  d12e4497
Nov 16, 2020
- src/gc_content/gc_content.py: fix error to tests · 60e5156d
  nfontrod authored 4 years ago
  
  60e5156d
- src/gc_content/gc_content.py: add error to tests · 7765e0d7
  nfontrod authored 4 years ago
  
  7765e0d7
- .gitlab-ci.yml: flake8 fails silently · 02946766
  nfontrod authored 4 years ago
  
  02946766
- .gitlab-ci.yml: execute flake8 in tests jobs · fdf488f3
  nfontrod authored 4 years ago
  
  fdf488f3
- sonar-project.properties: add flake8 report file · 673a382f
  nfontrod authored 4 years ago
  
  673a382f
- artifacts are untracked files · 869c3500
  nfontrod authored 4 years ago
  
  869c3500
- change dependencies name in sonarqube-check job · 13d8856e
  nfontrod authored 4 years ago
  
  13d8856e
- change dependencies name in sonarqube-check job · 10f00d34
  nfontrod authored 4 years ago
  
  10f00d34
- .gitlab-ci.yml naming stages ad moving artifacts in the first job · 025eee11
  nfontrod authored 4 years ago
  
  025eee11
- moving artifacts in sonarqube-check · b8d00165
  nfontrod authored 4 years ago
  
  b8d00165
- .git: add coverage.xml as a reports artifacts · 5a796088
  nfontrod authored 4 years ago
  
  5a796088
Nov 12, 2020
- .gitlab-ci.yml: fix coverage creation · 12c43727
  nfontrod authored 4 years ago
  
  12c43727
- modification for sonar to handle coverage · 79d12cbb
  nfontrod authored 4 years ago
  
  79d12cbb
- .gitlab-ci.yml: change SONAR_HOST_URL · 38b3a1ac
  nfontrod authored 4 years ago
  
  38b3a1ac
- deactivate sonar.host.url · e734310b
  nfontrod authored 4 years ago
  
  e734310b
- .gitlab-ci.yml: add sonarqube-check part · 209c598b
  nfontrod authored 4 years ago
  
  209c598b
- sonar-project.properties: add sonarQube config file · 6a246c4a
  nfontrod authored 4 years ago
  
  6a246c4a
- changing organisation of .gitlab-ci.yml file · 80677882
  nfontrod authored 4 years ago
  
  80677882
Nov 06, 2020
- .gitlab-ci.yml: add the new packages used · f388cc63
  nfontrod authored 4 years ago
  
  f388cc63
- src/gc_content/gc_content.py: fix tests · 70c8c0f8
  nfontrod authored 4 years ago
  
  70c8c0f8
- .gitignore: update · 66da01e0
  nfontrod authored 4 years ago
  
  66da01e0
- tests/files/test_genome.fa: a fasta file used for test · eccb6d43
  nfontrod authored 4 years ago
  
  eccb6d43
- src/bed_handler/config.py: add a test file corresponding to a genome · c5f95e9e
  nfontrod authored 4 years ago
  
  c5f95e9e
Nov 05, 2020
- src/gc_content/*.py: script to compute the gc content from bed files · 52a5208a
  nfontrod authored 4 years ago
  
  52a5208a