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LBMC
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bigWig_visu
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7902326b31059cef8d314cda5559ffda374389d6
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bigwig_visu
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authors
fmortreu
fmortreu
hpolvech
hpolvech
Laurent Modolo
lmodolo
nfontrod
nfontrod
4 authors
Nov 20, 2020
.gitlab-ci.yml: update token
· 7902326b
nfontrod
authored
4 years ago
7902326b
.gitlab-ci.yml: change token
· a3e85839
nfontrod
authored
4 years ago
a3e85839
.gitlab-ci.yml
· d12e4497
nfontrod
authored
4 years ago
d12e4497
Nov 16, 2020
src/gc_content/gc_content.py: fix error to tests
· 60e5156d
nfontrod
authored
4 years ago
60e5156d
src/gc_content/gc_content.py: add error to tests
· 7765e0d7
nfontrod
authored
4 years ago
7765e0d7
.gitlab-ci.yml: flake8 fails silently
· 02946766
nfontrod
authored
4 years ago
02946766
.gitlab-ci.yml: execute flake8 in tests jobs
· fdf488f3
nfontrod
authored
4 years ago
fdf488f3
sonar-project.properties: add flake8 report file
· 673a382f
nfontrod
authored
4 years ago
673a382f
artifacts are untracked files
· 869c3500
nfontrod
authored
4 years ago
869c3500
change dependencies name in sonarqube-check job
· 13d8856e
nfontrod
authored
4 years ago
13d8856e
change dependencies name in sonarqube-check job
· 10f00d34
nfontrod
authored
4 years ago
10f00d34
.gitlab-ci.yml naming stages ad moving artifacts in the first job
· 025eee11
nfontrod
authored
4 years ago
025eee11
moving artifacts in sonarqube-check
· b8d00165
nfontrod
authored
4 years ago
b8d00165
.git: add coverage.xml as a reports artifacts
· 5a796088
nfontrod
authored
4 years ago
5a796088
Nov 12, 2020
.gitlab-ci.yml: fix coverage creation
· 12c43727
nfontrod
authored
4 years ago
12c43727
modification for sonar to handle coverage
· 79d12cbb
nfontrod
authored
4 years ago
79d12cbb
.gitlab-ci.yml: change SONAR_HOST_URL
· 38b3a1ac
nfontrod
authored
4 years ago
38b3a1ac
deactivate sonar.host.url
· e734310b
nfontrod
authored
4 years ago
e734310b
.gitlab-ci.yml: add sonarqube-check part
· 209c598b
nfontrod
authored
4 years ago
209c598b
sonar-project.properties: add sonarQube config file
· 6a246c4a
nfontrod
authored
4 years ago
6a246c4a
changing organisation of .gitlab-ci.yml file
· 80677882
nfontrod
authored
4 years ago
80677882
Nov 06, 2020
.gitlab-ci.yml: add the new packages used
· f388cc63
nfontrod
authored
4 years ago
f388cc63
src/gc_content/gc_content.py: fix tests
· 70c8c0f8
nfontrod
authored
4 years ago
70c8c0f8
.gitignore: update
· 66da01e0
nfontrod
authored
4 years ago
66da01e0
tests/files/test_genome.fa: a fasta file used for test
· eccb6d43
nfontrod
authored
4 years ago
eccb6d43
src/bed_handler/config.py: add a test file corresponding to a genome
· c5f95e9e
nfontrod
authored
4 years ago
c5f95e9e
Nov 05, 2020
src/gc_content/*.py: script to compute the gc content from bed files
· 52a5208a
nfontrod
authored
4 years ago
52a5208a
Nov 04, 2020
src/visu/figure_maker.py: removing the creation of a tmp file to speed up the...
· 4d17cd23
nfontrod
authored
4 years ago
4d17cd23
src/bed_handler/select_regulated_near_ctcf_exons.py: pep8 modifications
· 4c0b11d0
nfontrod
authored
4 years ago
4c0b11d0
src/bed_handler/__main__.py: decommenting the first line in launcher
· 86be5656
nfontrod
authored
4 years ago
86be5656
src/visu/__main__.py src/visu/figure_maker.py: modification to create a figure...
· ca7c85c7
nfontrod
authored
4 years ago
ca7c85c7
Nov 03, 2020
src/bed_handler/__main__.py: add a parameter include0 to include exons...
· 759679b3
nfontrod
authored
4 years ago
759679b3
src/bed_handler/select_regulated_near_ctcf_exons.py: add a parameter include0...
· aee24d7d
nfontrod
authored
4 years ago
aee24d7d
Oct 27, 2020
src/bed_handler/select_regulated_near_ctcf_exons.py: exon containing CTCF...
· a16f26ca
nfontrod
authored
4 years ago
a16f26ca
Oct 26, 2020
.gitlab-ci.yml: add -y before build-essential
· 6c9063df
nfontrod
authored
4 years ago
6c9063df
.gitlab-ci.yml: add required dependencies for pyBigWig
· 36cc48b6
nfontrod
authored
4 years ago
36cc48b6
.gitlab-ci.yml: add -y after apt-get install
· aa105eb5
nfontrod
authored
4 years ago
aa105eb5
add requierments for pyBigWig
· 8747b80f
nfontrod
authored
4 years ago
8747b80f
.gitlab-ci.yml
· 40c7a054
nfontrod
authored
4 years ago
40c7a054
src/visu/figure_maker.py src/visu/__main__.py: bin0_norm -> norm parameter...
· 8344a444
nfontrod
authored
4 years ago
8344a444
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