Commits · 029467667d84f2782a5b8063c68c38d676bcab58 · LBMC / ReGArDS / Projects_Analyzes / bigWig_visu · GitLab

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Nov 16, 2020
- .gitlab-ci.yml: flake8 fails silently · 02946766
  nfontrod authored 4 years ago
  
  02946766
- .gitlab-ci.yml: execute flake8 in tests jobs · fdf488f3
  nfontrod authored 4 years ago
  
  fdf488f3
- sonar-project.properties: add flake8 report file · 673a382f
  nfontrod authored 4 years ago
  
  673a382f
- artifacts are untracked files · 869c3500
  nfontrod authored 4 years ago
  
  869c3500
- change dependencies name in sonarqube-check job · 13d8856e
  nfontrod authored 4 years ago
  
  13d8856e
- change dependencies name in sonarqube-check job · 10f00d34
  nfontrod authored 4 years ago
  
  10f00d34
- .gitlab-ci.yml naming stages ad moving artifacts in the first job · 025eee11
  nfontrod authored 4 years ago
  
  025eee11
- moving artifacts in sonarqube-check · b8d00165
  nfontrod authored 4 years ago
  
  b8d00165
- .git: add coverage.xml as a reports artifacts · 5a796088
  nfontrod authored 4 years ago
  
  5a796088
Nov 12, 2020
- .gitlab-ci.yml: fix coverage creation · 12c43727
  nfontrod authored 4 years ago
  
  12c43727
- modification for sonar to handle coverage · 79d12cbb
  nfontrod authored 4 years ago
  
  79d12cbb
- .gitlab-ci.yml: change SONAR_HOST_URL · 38b3a1ac
  nfontrod authored 4 years ago
  
  38b3a1ac
- deactivate sonar.host.url · e734310b
  nfontrod authored 4 years ago
  
  e734310b
- .gitlab-ci.yml: add sonarqube-check part · 209c598b
  nfontrod authored 4 years ago
  
  209c598b
- sonar-project.properties: add sonarQube config file · 6a246c4a
  nfontrod authored 4 years ago
  
  6a246c4a
- changing organisation of .gitlab-ci.yml file · 80677882
  nfontrod authored 4 years ago
  
  80677882
Nov 06, 2020
- .gitlab-ci.yml: add the new packages used · f388cc63
  nfontrod authored 4 years ago
  
  f388cc63
- src/gc_content/gc_content.py: fix tests · 70c8c0f8
  nfontrod authored 4 years ago
  
  70c8c0f8
- .gitignore: update · 66da01e0
  nfontrod authored 4 years ago
  
  66da01e0
- tests/files/test_genome.fa: a fasta file used for test · eccb6d43
  nfontrod authored 4 years ago
  
  eccb6d43
- src/bed_handler/config.py: add a test file corresponding to a genome · c5f95e9e
  nfontrod authored 4 years ago
  
  c5f95e9e
Nov 05, 2020
- src/gc_content/*.py: script to compute the gc content from bed files · 52a5208a
  nfontrod authored 4 years ago
  
  52a5208a
Nov 04, 2020
- src/visu/figure_maker.py: removing the creation of a tmp file to speed up the... · 4d17cd23
  nfontrod authored 4 years ago
  4d17cd23
- src/bed_handler/select_regulated_near_ctcf_exons.py: pep8 modifications · 4c0b11d0
  nfontrod authored 4 years ago
  
  4c0b11d0
- src/bed_handler/__main__.py: decommenting the first line in launcher · 86be5656
  nfontrod authored 4 years ago
  
  86be5656
- src/visu/__main__.py src/visu/figure_maker.py: modification to create a figure... · ca7c85c7
  nfontrod authored 4 years ago
  ca7c85c7
Nov 03, 2020
- src/bed_handler/__main__.py: add a parameter include0 to include exons... · 759679b3
  nfontrod authored 4 years ago
  759679b3
- src/bed_handler/select_regulated_near_ctcf_exons.py: add a parameter include0... · aee24d7d
  nfontrod authored 4 years ago
  aee24d7d
Oct 27, 2020
- src/bed_handler/select_regulated_near_ctcf_exons.py: exon containing CTCF... · a16f26ca
  nfontrod authored 4 years ago
  a16f26ca
Oct 26, 2020
- .gitlab-ci.yml: add -y before build-essential · 6c9063df
  nfontrod authored 4 years ago
  
  6c9063df
- .gitlab-ci.yml: add required dependencies for pyBigWig · 36cc48b6
  nfontrod authored 4 years ago
  
  36cc48b6
- .gitlab-ci.yml: add -y after apt-get install · aa105eb5
  nfontrod authored 4 years ago
  
  aa105eb5
- add requierments for pyBigWig · 8747b80f
  nfontrod authored 4 years ago
  
  8747b80f
- .gitlab-ci.yml · 40c7a054
  nfontrod authored 4 years ago
  
  40c7a054
- src/visu/figure_maker.py src/visu/__main__.py: bin0_norm -> norm parameter... · 8344a444
  nfontrod authored 4 years ago
  8344a444
- src/bed_handler/select_regulated_near_ctcf_exons.py: modification of... · f9647cba
  nfontrod authored 4 years ago
  f9647cba
Oct 23, 2020
- src.bed_handler: creation of bed of regulated exons by DDX5/17 · 2cd7037b
  nfontrod authored 4 years ago
  
  2cd7037b
- src/bed_handler/filter_bed.py: script that allow filtering rows in a bed file · 96d104de
  nfontrod authored 4 years ago
  
  96d104de
- tests/files/Sipp_exon_vs_CTCF.csv: changes in distance column · 9ccf2666
  nfontrod authored 4 years ago
  
  9ccf2666
- src/visu/figure_maker.py: modification of the tmp file name · 202b6d60
  nfontrod authored 4 years ago
  
  202b6d60