modification for sonar to handle coverage

.gitignore

@@ -6,3 +6,5 @@ src/__pycache__/
 .coverage
 src/gc_content/__pycache__/
 tests/files/test_genome.fa.fai
+coverage.xml
+.scannerwork/

.gitlab-ci.yml

@@ -18,6 +18,7 @@ tests:
     - pip install biopython==1.75
   script:
     - coverage run -m unittest discover
+    - coverage report xml
 
 sonarqube-check:
   image:
@@ -25,7 +26,7 @@ sonarqube-check:
     entrypoint: [ "" ]
   variables:
     SONAR_TOKEN: ae2c1731888a2155e90ea0a1dcec551c8d4336bd
-    SONAR_HOST_URL: http://192.168.1.58:9000/
+    SONAR_HOST_URL: http://192.168.1.58:9000/ # You have to not use localhost otherwise it will not work
     SONAR_USER_HOME: "${CI_PROJECT_DIR}/.sonar"  # Defines the location of the analysis task cache
     GIT_DEPTH: "0"  # Tells git to fetch all the branches of the project, required by the analysis task
   cache:

sonar-project.properties

@@ -10,6 +10,7 @@ sonar.sources=.
 # Encoding of the source code. Default is default system encoding
 sonar.sourceEncoding=UTF-8
 #Description of the project
+sonar.python.coverage.reportPaths=./coverage.xml
 sonar.projectDescription=A tools to visualise bigwig coverage.
 #----- Default SonarQube server
 #sonar.host.url=http://localhost:9000
\ No newline at end of file