From 79d12cbbb009f2f34b3ad15fff953cd3996e79e6 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Thu, 12 Nov 2020 19:30:18 +0100
Subject: [PATCH] modification for sonar to handle coverage
---
.gitignore | 2 ++
.gitlab-ci.yml | 3 ++-
sonar-project.properties | 1 +
3 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/.gitignore b/.gitignore
index f70114a..c92a2e4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -6,3 +6,5 @@ src/__pycache__/
.coverage
src/gc_content/__pycache__/
tests/files/test_genome.fa.fai
+coverage.xml
+.scannerwork/
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ea70f87..be1ff4e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -18,6 +18,7 @@ tests:
- pip install biopython==1.75
script:
- coverage run -m unittest discover
+ - coverage report xml
sonarqube-check:
image:
@@ -25,7 +26,7 @@ sonarqube-check:
entrypoint: [ "" ]
variables:
SONAR_TOKEN: ae2c1731888a2155e90ea0a1dcec551c8d4336bd
- SONAR_HOST_URL: http://192.168.1.58:9000/
+ SONAR_HOST_URL: http://192.168.1.58:9000/ # You have to not use localhost otherwise it will not work
SONAR_USER_HOME: "${CI_PROJECT_DIR}/.sonar" # Defines the location of the analysis task cache
GIT_DEPTH: "0" # Tells git to fetch all the branches of the project, required by the analysis task
cache:
diff --git a/sonar-project.properties b/sonar-project.properties
index cfeb631..4154224 100644
--- a/sonar-project.properties
+++ b/sonar-project.properties
@@ -10,6 +10,7 @@ sonar.sources=.
# Encoding of the source code. Default is default system encoding
sonar.sourceEncoding=UTF-8
#Description of the project
+sonar.python.coverage.reportPaths=./coverage.xml
sonar.projectDescription=A tools to visualise bigwig coverage.
#----- Default SonarQube server
#sonar.host.url=http://localhost:9000
\ No newline at end of file
--
GitLab