Commits · ceca3ce0513a67370ce258f6b1d2f827cc04329b · LBMC / nextflow · GitLab

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Oct 19, 2022
- update licencing informations · 29a44149
  Laurent Modolo authored 2 years ago
  
  Verified
  
  29a44149
Mar 14, 2022
- src/nf_modules/hisat2/main.nf: remove default parameters · 92058047
  Laurent Modolo authored 3 years ago
  
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  92058047
Mar 01, 2022
- hisat2: remove samtools report · c6865206
  Laurent Modolo authored 3 years ago
  
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  c6865206
- hisat2: change report file name · 170a745c
  Laurent Modolo authored 3 years ago
  
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  170a745c
- hisat2: change report file name · 600ee64e
  Laurent Modolo authored 3 years ago
  
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  600ee64e
Feb 28, 2022
- src/nf_modules/hisat2/main.nf · d5cf091f
  Laurent Modolo authored 3 years ago
  
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  d5cf091f
Jan 06, 2022
- hisat2: add main.nf · b6110260
  Laurent Modolo authored 3 years ago
  
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  b6110260
Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
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  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
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  cc2d49f6
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
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  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
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  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
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  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
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  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
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  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
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  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
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  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
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  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
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  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
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  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
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  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
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  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
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  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
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  78189351
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
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  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
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  99eb8705
Apr 16, 2019
- hisat2: add in2p3 config · eeac2fbf
  Laurent Modolo authored 5 years ago
  
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  eeac2fbf
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
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  a972f993
Mar 29, 2019
- hisat2: add v2.1.0 · b150232b
  Laurent Modolo authored 5 years ago
  
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  b150232b
- update psmn module and hisat2 config · d51c969a
  Laurent Modolo authored 5 years ago
  
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  d51c969a
- hisat2: merge samtools and hisat2 in the process · 59b0f72d
  Laurent Modolo authored 5 years ago
  
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  59b0f72d
- hisat2: update process and config to match new format · 58d2e60a
  Laurent Modolo authored 5 years ago
  
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  58d2e60a
Mar 27, 2019
- src/nf_modules/Hisat2/ -> src/nf_modules/hisat2/ · 215c8f71
  nfontrod authored 6 years ago
  
  215c8f71