Commits · cc9f3d11d2bf8d66d3b9b7097b440a151a33b976 · LBMC / nextflow · GitLab

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Mar 07, 2019
- music: fix containers and tests · cc9f3d11
  Laurent Modolo authored Mar 7, 2019
  
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  cc9f3d11
- rsem: fix tests · 099b8b5e
  Laurent Modolo authored Mar 7, 2019
  
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  099b8b5e
Mar 06, 2019
- music: fix tests · 7b7eab24
  Laurent Modolo authored Mar 6, 2019
  
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  7b7eab24
- music: fix dockerfile · 169283c6
  Laurent Modolo authored Mar 6, 2019
  
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  169283c6
- update psmn_modules · 760da7c8
  Laurent Modolo authored Mar 6, 2019
  
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  760da7c8
- htseq: fix Dockerfile · 6c0e0c9d
  Laurent Modolo authored Mar 6, 2019
  
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  6c0e0c9d
- bwa: fix warining in tests · d0a65940
  Laurent Modolo authored Mar 6, 2019
  
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  d0a65940
- nf_modules: add singularity in config files and tests.sh · f720ba52
  Laurent Modolo authored Mar 6, 2019
  
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  f720ba52
- deeptools: add singularity to files · dde8e8a2
  Laurent Modolo authored Mar 6, 2019
  
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  dde8e8a2
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored Mar 6, 2019
  
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  60040ed6
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored Mar 6, 2019
  
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  80b5c871
- update_tools.sh: add update tool for psmn module · 67f677d7
  Laurent Modolo authored Mar 6, 2019
  
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  67f677d7
Mar 05, 2019
- update psmn_modules to lowercase version · 5b10d565
  Laurent Modolo authored Mar 5, 2019
  
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  5b10d565
- update psmn_modules · f0625618
  Laurent Modolo authored Mar 5, 2019
  
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  f0625618
- update_tools.sh: auto update for singularity docker and nf modules · 45ce7f4b
  Laurent Modolo authored Mar 5, 2019
  
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  45ce7f4b
- singularity build.sh: add error catch on build · 789625d7
  Laurent Modolo authored Mar 5, 2019
  
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  789625d7
- ucsc: add singularity files · d98673b6
  Laurent Modolo authored Mar 5, 2019
  
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  d98673b6
- trimmomatic: add singularity files · f645f605
  Laurent Modolo authored Mar 5, 2019
  
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  f645f605
- tophat: add singularity files · ebf79d0c
  Laurent Modolo authored Mar 5, 2019
  
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  ebf79d0c
Mar 04, 2019
- sratoolkit: add singularity files · 976e5e03
  Laurent Modolo authored Mar 4, 2019
  
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  976e5e03
- samblaster: add singularity files · fe2a22eb
  Laurent Modolo authored Mar 4, 2019
  
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  fe2a22eb
- salmon: add singularity files · 086ccdb8
  Laurent Modolo authored Mar 4, 2019
  
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  086ccdb8
- rsem: add singularity files · 54834540
  Laurent Modolo authored Mar 4, 2019
  
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  54834540
- pigz: add singularity files · 97f4337f
  Laurent Modolo authored Mar 4, 2019
  
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  97f4337f
- picard: add PicardCommandLine for singularity · a8472a83
  Laurent Modolo authored Mar 4, 2019
  
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  a8472a83
- picard: add singularity files · 8e82fe73
  Laurent Modolo authored Mar 4, 2019
  
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  8e82fe73
- samtools: add singularity files · 4a1b22a8
  Laurent Modolo authored Mar 4, 2019
  
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  4a1b22a8
- multiqc: add singularity files · dffc6644
  Laurent Modolo authored Mar 4, 2019
  
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  dffc6644
- kallisto: add singularity files · 2c69d031
  Laurent Modolo authored Mar 4, 2019
  
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  2c69d031
- htseq: add singularity files · ceabe427
  Laurent Modolo authored Mar 4, 2019
  
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  ceabe427
- hisat2: add singularity files · e8fe1028
  Laurent Modolo authored Mar 4, 2019
  
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  e8fe1028
- gatk: add singularity files · 7a4d983c
  Laurent Modolo authored Mar 4, 2019
  
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  7a4d983c
- deeptools: add singularity files · 9fe7ac40
  Laurent Modolo authored Mar 4, 2019
  
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  9fe7ac40
- file_handle: add singularity files · 220f0ecf
  Laurent Modolo authored Mar 4, 2019
  
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  220f0ecf
- cutadapt: add singularity files · 870693e5
  Laurent Modolo authored Mar 4, 2019
  
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  870693e5
- canu: add singularity files · adcfbaad
  Laurent Modolo authored Mar 4, 2019
  
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  adcfbaad
- bioawk: add singularity files · 259e4d5b
  Laurent Modolo authored Mar 4, 2019
  
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  259e4d5b
- bcftools: add singularity files · 9329a13d
  Laurent Modolo authored Mar 4, 2019
  
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  9329a13d
- fastqc: add singularity to nf files · c55f3be5
  Laurent Modolo authored Mar 4, 2019
  
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  c55f3be5
- update link for all modules names to lowercase · 9b037d38
  Laurent Modolo authored Mar 4, 2019
  
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  9b037d38