Commits · 94c41f304b735ec3457e01df28d2bce20c230e72 · LBMC / nextflow

Jan 22, 2021
- nf_modules: add sambamba to DSL2 · 94c41f30
  Laurent Modolo authored 4 years ago
  
  94c41f30
- nf_modules: add samtools DSL2 · 3de89ded
  Laurent Modolo authored 4 years ago
  
  3de89ded
- nf_modules: add picard · a3d3e95b
  Laurent Modolo authored 4 years ago
  
  a3d3e95b
- nf_modules: multiqc add DSL2 · fe874785
  Laurent Modolo authored 4 years ago
  
  fe874785
- nf_modules: fastqc add DSL2 · f172f456
  Laurent Modolo authored 4 years ago
  
  f172f456
- nf_modules: masc2 add DSL2 · a12e9229
  Laurent Modolo authored 4 years ago
  
  a12e9229
- nf_modules: add bowtie to DSL2 · 829ff319
  Laurent Modolo authored 4 years ago
  
  829ff319
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
  cecad357
Jan 20, 2021
- nf_modules: add kallisto to DSL2 · 6706a92d
  Laurent Modolo authored 4 years ago
  
  6706a92d
- nf_modules: add bedtools for DSL2 · b1f4bf87
  Laurent Modolo authored 4 years ago
  
  b1f4bf87
- nf_modules: add urqt for DSL2 · aefdae4d
  Laurent Modolo authored 4 years ago
  
  aefdae4d
- nf_modules: add DSL2 for cutadapt · 3490e2f1
  Laurent Modolo authored 4 years ago
  
  3490e2f1
- nf_modules: add DSL2 module for bowtie2 · 209cb4b1
  Laurent Modolo authored 4 years ago
  
  209cb4b1
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
  5cdad1d7
Jul 08, 2020
- multiqc: fix psmn config files · 8094b470
  Laurent Modolo authored 4 years ago
  
  8094b470
Jul 07, 2020
- multiqc: add missing section in config file · 55c6c00b
  Laurent Modolo authored 4 years ago
  
  55c6c00b
Jun 29, 2020
- nf_modules: fix cutadapt version · bb06add8
  Laurent Modolo authored 4 years ago
  
  bb06add8
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  c116038b
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
  195e5ce1
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
  2b14934b
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  05e1de4c
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
Nov 20, 2019
- nf_modules: add STAR · 4ff7d565
  Laurent Modolo authored 5 years ago
  
  4ff7d565
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- nf_modules: bowtie fixe conda path · 9ec1ade8
  Laurent Modolo authored 5 years ago
  
  9ec1ade8
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  3ced2125
Jul 18, 2019
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored 5 years ago
  
  01dac1f9
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
  78cf7e3c
- htseq: fix singularity config · da3831bb
  Laurent Modolo authored 5 years ago
  
  da3831bb
- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored 5 years ago
  
  f92cde7c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
  92f8f605