nf_modules: fastqc add DSL2

src/nf_modules/fastqc/main.nf

+version = "0.11.5"
+container_url = "lbmc/fastqc:${version}"
+
+process fastqc_fastq_pairedend {
+  container = "${container_url}"
+  label "big_mem_mono_cpus"
+  tag "$pair_id"
+  publishDir "results/fastq/fastqc/", mode: 'copy'
+
+  input:
+  tuple val(pair_id), path(reads)
+
+  output:
+  path "*.{zip,html}", emit: report
+
+  script:
+"""
+fastqc --quiet --threads ${task.cpus} --format fastq --outdir ./ \
+${reads[0]} ${reads[1]}
+"""
+}
+
+process fastqc_fastq_singleend {
+  container = "${container_url}"
+  label "big_mem_mono_cpus"
+  tag "$file_id"
+  publishDir "results/fastq/fastqc/", mode: 'copy'
+
+  input:
+  tuple val(file_id), path(reads)
+
+  output:
+    path "*.{zip,html}", emit: report
+
+  script:
+"""
+fastqc --quiet --threads ${task.cpus} --format fastq --outdir ./ ${reads}
+"""
+}
+