Commits · 8afe54bb8ef84bc16cbb4a43bec4e0fde92ccc52 · LBMC / nextflow · GitLab

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Apr 14, 2021
- nf_modules: update module from g2gtools to multiqc to match the CONTRIBUTING.md · 8afe54bb
  Laurent Modolo authored 3 years ago
  
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  8afe54bb
- fastp: fix variable name in fastp_accel_1splus · 9c9cf82d
  Laurent Modolo authored 3 years ago
  
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  9c9cf82d
- fastp: update fastp to match CONTRIBUTING.md · 2924d6ef
  Laurent Modolo authored 3 years ago
  
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  2924d6ef
- kallisto: update script to match CONTRIBUTING.md · be4657c7
  Laurent Modolo authored 3 years ago
  
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  be4657c7
- kallisto: fix warning in mapping_fastq about single-end parameters · 6f027a2e
  Laurent Modolo authored 3 years ago
  
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  6f027a2e
Apr 13, 2021
- update solution_RNASeq.nf to match CONTRIBUTING.md · 8b70de28
  Laurent Modolo authored 3 years ago
  
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  8b70de28
- bedtools: fix typo :19 · bc81c837
  Laurent Modolo authored 3 years ago
  
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  bc81c837
- kallisto: fix typo :15 · b2f88ee7
  Laurent Modolo authored 3 years ago
  
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  b2f88ee7
- bedtools: update to match CONTRIBUTING.md · 699cd563
  Laurent Modolo authored 3 years ago
  
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  699cd563
- kallisto: update file to match CONTRIBUTING.md · 9a588dd5
  Laurent Modolo authored 3 years ago
  
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  9a588dd5
- kallisto: fix typo :47 · 8ddc3ee6
  Laurent Modolo authored 3 years ago
  
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  8ddc3ee6
- cutadapt: fix typo :34 · d69ff6ea
  Laurent Modolo authored 3 years ago
  
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- cutadapt: fix bug :28 · 18e214ae
  Laurent Modolo authored 3 years ago
  
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  18e214ae
- fastp: add --interleaved_in for 2nd fastp for accel_s1plus · 8ef138b4
  Laurent Modolo authored 3 years ago
  
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  8ef138b4
- fastp: update accel_1splus protocol · d2e7b69c
  Laurent Modolo authored 3 years ago
  
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- fastp: add accel_1splus protocol trimming with a switch · c98150b9
  Laurent Modolo authored 3 years ago
  
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  c98150b9
Apr 08, 2021
- nf_modules: add params.<process_names> for each process · 4a7355a2
  Laurent Modolo authored 4 years ago
  
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  4a7355a2
- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 4 years ago
  
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  ece57ce1
- fastp: add params.fastp · e8c33f90
  Laurent Modolo authored 4 years ago
  
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Mar 17, 2021
- g2gtools: fix typo :13 · 3c856968
  Laurent Modolo authored 4 years ago
  
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  3c856968
- g2gtools: fix typo : 13 · 4c9ca119
  Laurent Modolo authored 4 years ago
  
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- g2gtools: remove .gz from fa.gz · db1f8f5e
  Laurent Modolo authored 4 years ago
  
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- g2gtools: fix typo :47 · b3e138c7
  Laurent Modolo authored 4 years ago
  
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  b3e138c7
- g2gtools: rename fasta output to fa.gz · 2a74ce1f
  Laurent Modolo authored 4 years ago
  
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- g2gtools: pass along tbi file · 873b31fd
  Laurent Modolo authored 4 years ago
  
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  873b31fd
- g2gtools: change output name of vcf2vci · b4761bcd
  Laurent Modolo authored 4 years ago
  
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- g2gtools: fix vci_build command · f167d159
  Laurent Modolo authored 4 years ago
  
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  f167d159
Mar 16, 2021
- samtools: fix input for multiqc process · 15bb2a0a
  Laurent Modolo authored 4 years ago
  
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  15bb2a0a
- samtools: fix output for multiqc process · ce6cb60b
  Laurent Modolo authored 4 years ago
  
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  ce6cb60b
- samtools: add process to rename files for multiqc · 309f80d7
  Laurent Modolo authored 4 years ago
  
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  309f80d7
- g2gtools: simpler file_id structure · 17d3a31f
  Laurent Modolo authored 4 years ago
  
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- g2gtools: caputre stdout sent to stderr... · d80598c8
  Laurent Modolo authored 4 years ago
  
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- g2gtools: capture stdout sent to stderr · 216457b0
  Laurent Modolo authored 4 years ago
  
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  216457b0
- g2gtools: change file_id format · 8b41995c
  Laurent Modolo authored 4 years ago
  
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  8b41995c
- gatk4: fix gvcf_genotyping variable :199 · 106ff35f
  Laurent Modolo authored 4 years ago
  
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  106ff35f
- gatk4: change output to avoid using file_id var as it can be a dict · e0b5c50b
  Laurent Modolo authored 4 years ago
  
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Mar 15, 2021
- minimap2: add main.nf · 324f5505
  Laurent Modolo authored 4 years ago
  
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  324f5505
Mar 12, 2021
- g2gtools: add convert process · 9c64bd7b
  Laurent Modolo authored 4 years ago
  
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  9c64bd7b
- bwa: add single_end mapping · d0b4f082
  Laurent Modolo authored 4 years ago
  
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  d0b4f082
- add missing pairend_end & single_end switch · c64d2dd0
  Laurent Modolo authored 4 years ago
  
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  c64d2dd0