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Verified Commit 106ff35f authored by Laurent Modolo's avatar Laurent Modolo
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gatk4: fix gvcf_genotyping variable :199

parent e0b5c50b
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...@@ -196,7 +196,7 @@ process gvcf_genotyping { ...@@ -196,7 +196,7 @@ process gvcf_genotyping {
gatk --java-options "-Xmx${xmx_memory}G" GenotypeGVCFs \ gatk --java-options "-Xmx${xmx_memory}G" GenotypeGVCFs \
-R ${fasta} \ -R ${fasta} \
-V ${gvcf} \ -V ${gvcf} \
-O ${bam.simpleName}_joint.vcf.gz -O ${gvcf.simpleName}_joint.vcf.gz
""" """
} }
......
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