Commits · 87c79ae224afb834ffc01ec1668d0b71e1c4125b · LBMC / nextflow

Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 4 years ago
  
  87c79ae2
Apr 23, 2020
- docker: gatk3 increase java memory · 343b5dd4
  Laurent Modolo authored 5 years ago
  
  343b5dd4
Apr 21, 2020
- docker: add kallistobustools container · 172c6ed9
  Laurent Modolo authored 5 years ago
  
  172c6ed9
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 5 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 5 years ago
  
  670315f5
Apr 17, 2020
- add link to singularity shared folder at the psmn · 63d7665d
  Laurent Modolo authored 5 years ago
  
  63d7665d
- solution_RNASeq.config: first test config of singularity psmn · 876dc0ff
  Laurent Modolo authored 5 years ago
  
  876dc0ff
- update psmn config to new queues · c116038b
  Laurent Modolo authored 5 years ago
  
  c116038b
Mar 31, 2020
- Dockerfile: increase Xmx of java tools · d752181f
  Laurent Modolo authored 5 years ago
  
  d752181f
- solution_RNASeq.config: update config file for psmn · 75b6cf0e
  Laurent Modolo authored 5 years ago
  
  75b6cf0e
- RNASeq: rename solution of the practical · 7a2e76cd
  Laurent Modolo authored 5 years ago
  
  7a2e76cd
- RNASeq: add experimental biologists practical solution · 0a015caa
  Laurent Modolo authored 5 years ago
  
  0a015caa
Mar 30, 2020
- conda_envs: add link to gatk_3.8.0 · eae6b0e2
  Laurent Modolo authored 5 years ago
  
  eae6b0e2
Mar 27, 2020
- Picard: increase java default memory · 5a7f36eb
  Laurent Modolo authored 5 years ago
  
  5a7f36eb
- Dockerfile: last add script to bin · c2fd8aa4
  Laurent Modolo authored 5 years ago
  
  c2fd8aa4
- docker: add last version 1060 · 339a3a62
  Laurent Modolo authored 5 years ago
  
  339a3a62
Mar 25, 2020
- conda_envs: add link to bwa_0.7.17 · 5c3afc58
  Laurent Modolo authored 5 years ago
  
  5c3afc58
- conda_packages.sh: add bwa 0.7.17 · 1ee9f13e
  Laurent Modolo authored 5 years ago
  
  1ee9f13e
Mar 24, 2020
- Docker: gatk3 fix arguments parsing · 66cb84e1
  Laurent Modolo authored 5 years ago
  
  66cb84e1
- Dockerfile: gatk3 add gatk3 executable script · cadb073c
  Laurent Modolo authored 5 years ago
  
  cadb073c
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
  195e5ce1
- add RNASeq.config · 7c7984ec
  Laurent Modolo authored 5 years ago
  
  7c7984ec
- create RNASeq.nf · 99a62a30
  Laurent Modolo authored 5 years ago
  
  99a62a30
- fasta_sampler.nf: variable output name · e71dcd50
  Laurent Modolo authored 5 years ago
  
  e71dcd50
- get sample results · 6d8afaf1
  Laurent Modolo authored 5 years ago
  
  6d8afaf1
- create fasta_sampler.nf · fa5d3464
  Laurent Modolo authored 5 years ago
  
  fa5d3464
Jan 08, 2020
- umi_tools: Dockerfile, fix dependences · 6fa60ca9
  Laurent Modolo authored 5 years ago
  
  6fa60ca9
Dec 13, 2019
- cutadapt: config change version from 2.1 to 2.4 · 2b14934b
  Laurent Modolo authored 5 years ago
  
  2b14934b
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  05e1de4c
Dec 09, 2019
- psmn: fix gatk3.8.0 env name · b8dafbb8
  Laurent Modolo authored 5 years ago
  
  b8dafbb8
- docker: gatk3 fix licence problem · 9bf9ce0e
  Laurent Modolo authored 5 years ago
  
  9bf9ce0e
Dec 06, 2019
- conda: add psmn links · c30f9337
  Laurent Modolo authored 5 years ago
  
  c30f9337
- conda_packages.sh: add gatk4 · 46f9f194
  Laurent Modolo authored 5 years ago
  
  46f9f194
- docker_modules: add gatk3.8.0 · eb29dd1f
  Laurent Modolo authored 5 years ago
  
  eb29dd1f
Nov 28, 2019
- training_dataset.config: remove mail alert from ccin2p3 · 3efbbb5e
  Laurent Modolo authored 5 years ago
  
  3efbbb5e
- in2p3.pbs: fix work for nf · 42b7c647
  Laurent Modolo authored 5 years ago
  
  42b7c647
- training_dataset.config: add mail report · 4abd43f1
  Laurent Modolo authored 5 years ago
  
  4abd43f1
- singularity in2p3: fix symlink · 2e7b99ec
  Laurent Modolo authored 5 years ago
  
  2e7b99ec
- training_dataset.config: final fix for in2p3 cacheDir · 5a8a415b
  Laurent Modolo authored 5 years ago
  
  5a8a415b
- in2p3.pbs: fix files path · 40e33e80
  Laurent Modolo authored 5 years ago
  
  40e33e80