solution_RNASeq.config: update config file for psmn

src/solution_RNASeq.config

@@ -61,18 +61,19 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
+        queue = 'monointeldeb128'
       }
       withName: trimming {
         beforeScript = "source $baseDir/.conda_psmn.sh"
         conda = "$baseDir/.conda_envs/urqt_d62c1f8"
         executor = "sge"
         clusterOptions = "-cwd -V"
-        memory = "5GB"
-        cpus = 16
-        time = "12h"
-        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
-        penv = 'openmp16'
+        cpus = 32
+        memory = "30GB"
+        time = "24h"
+        queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
+        penv = 'openmp32'
+
       }
       withName: fasta_from_bed {
         beforeScript = "source $baseDir/.conda_psmn.sh"
@@ -82,29 +83,29 @@ profiles {
         cpus = 1
         memory = "20GB"
         time = "12h"
-        queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128'
+        queue = 'monointeldeb128'
       }
       withName: index_fasta {
         beforeScript = "source $baseDir/.conda_psmn.sh"
         conda = "$baseDir/.conda_envs/kallisto_0.44.0"
         executor = "sge"
         clusterOptions = "-cwd -V"
-        cpus = 16
+        cpus = 32
         memory = "30GB"
         time = "24h"
-        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
-        penv = 'openmp16'
+        queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
+        penv = 'openmp32'
       }
       withName: mapping_fastq {
         beforeScript = "source $baseDir/.conda_psmn.sh"
         conda = "$baseDir/.conda_envs/kallisto_0.44.0"
         executor = "sge"
         clusterOptions = "-cwd -V"
-        cpus = 16
+        cpus = 32
         memory = "30GB"
         time = "24h"
-        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
-        penv = 'openmp16'
+        queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
+        penv = 'openmp32'
       }
     }
   }