diff --git a/src/solution_RNASeq.config b/src/solution_RNASeq.config index 69f61457db5b03f97c5546aa66f3228d8e8c2b69..3e8ba47bdb12f98c134ca4ebf96a2593d6ba6c2c 100644 --- a/src/solution_RNASeq.config +++ b/src/solution_RNASeq.config @@ -61,18 +61,19 @@ profiles { cpus = 1 memory = "20GB" time = "12h" - queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128' + queue = 'monointeldeb128' } withName: trimming { beforeScript = "source $baseDir/.conda_psmn.sh" conda = "$baseDir/.conda_envs/urqt_d62c1f8" executor = "sge" clusterOptions = "-cwd -V" - memory = "5GB" - cpus = 16 - time = "12h" - queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' - penv = 'openmp16' + cpus = 32 + memory = "30GB" + time = "24h" + queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' + penv = 'openmp32' + } withName: fasta_from_bed { beforeScript = "source $baseDir/.conda_psmn.sh" @@ -82,29 +83,29 @@ profiles { cpus = 1 memory = "20GB" time = "12h" - queue = 'monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128' + queue = 'monointeldeb128' } withName: index_fasta { beforeScript = "source $baseDir/.conda_psmn.sh" conda = "$baseDir/.conda_envs/kallisto_0.44.0" executor = "sge" clusterOptions = "-cwd -V" - cpus = 16 + cpus = 32 memory = "30GB" time = "24h" - queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' - penv = 'openmp16' + queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' + penv = 'openmp32' } withName: mapping_fastq { beforeScript = "source $baseDir/.conda_psmn.sh" conda = "$baseDir/.conda_envs/kallisto_0.44.0" executor = "sge" clusterOptions = "-cwd -V" - cpus = 16 + cpus = 32 memory = "30GB" time = "24h" - queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' - penv = 'openmp16' + queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' + penv = 'openmp32' } } }