Commits · 7b298e9246be8f85104f628cf9fe9024c5e1b6f9 · LBMC / nextflow · GitLab

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Jan 22, 2021
- nf_modules: add deeptools to DSL2 · 7b298e92
  Laurent Modolo authored 4 years ago
  
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  7b298e92
- nf_modules: add sambamba to DSL2 · 94c41f30
  Laurent Modolo authored 4 years ago
  
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  94c41f30
- nf_modules: add samtools DSL2 · 3de89ded
  Laurent Modolo authored 4 years ago
  
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  3de89ded
- nf_modules: add picard · a3d3e95b
  Laurent Modolo authored 4 years ago
  
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  a3d3e95b
- nf_modules: multiqc add DSL2 · fe874785
  Laurent Modolo authored 4 years ago
  
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  fe874785
- nf_modules: fastqc add DSL2 · f172f456
  Laurent Modolo authored 4 years ago
  
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  f172f456
- nf_modules: masc2 add DSL2 · a12e9229
  Laurent Modolo authored 4 years ago
  
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  a12e9229
- nf_modules: add bowtie to DSL2 · 829ff319
  Laurent Modolo authored 4 years ago
  
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  829ff319
- nextflow.config: change queue list for psmn · 629de1ab
  Laurent Modolo authored 4 years ago
  
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  629de1ab
- nextflow.config: add missing space :40 · 924256a1
  Laurent Modolo authored 4 years ago
  
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  924256a1
- solution_RNASeq.nf: update to DSL2 · b60be324
  Laurent Modolo authored 4 years ago
  
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  b60be324
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
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  cecad357
Jan 20, 2021
- solution_RNASeq.nf: add command to launch pipeline · ad62a240
  Laurent Modolo authored 4 years ago
  
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  ad62a240
- nf_modules: add kallisto to DSL2 · 6706a92d
  Laurent Modolo authored 4 years ago
  
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  6706a92d
- nf_modules: add bedtools for DSL2 · b1f4bf87
  Laurent Modolo authored 4 years ago
  
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  b1f4bf87
- nf_modules: add urqt for DSL2 · aefdae4d
  Laurent Modolo authored 4 years ago
  
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  aefdae4d
- nf_modules: add DSL2 for cutadapt · 3490e2f1
  Laurent Modolo authored 4 years ago
  
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  3490e2f1
- nextflow.config: add generic config file for module use · d3176121
  Laurent Modolo authored 4 years ago
  
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  d3176121
- nf_modules: add DSL2 module for bowtie2 · 209cb4b1
  Laurent Modolo authored 4 years ago
  
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  209cb4b1
- fix r-base 4.0.2 · 9b4d697a
  Laurent Modolo authored 4 years ago
  
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  9b4d697a
Oct 09, 2020
- Merge remote-tracking branch 'refs/remotes/origin/master' into master · 4b4f0b3a
  Laurent Modolo authored 4 years ago
  
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  4b4f0b3a
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
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  5cdad1d7
- doc/TP_experimental_biologists.md updated · ff0af418
  Laurent Modolo authored 4 years ago
  
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  ff0af418
Sep 09, 2020
- docker: fix r path in doker_init.sh · f318f0ff
  Laurent Modolo authored 4 years ago
  
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  f318f0ff
- docker: add sabre 039a55e · 4c24548d
  Laurent Modolo authored 4 years ago
  
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  4c24548d
Aug 31, 2020
- docker: mv r folder to r-base folder to be consistent with img names · fcb7af24
  Laurent Modolo authored 4 years ago
  
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  fcb7af24
- docker: add r-base 4.0.2 · 0415e251
  Laurent Modolo authored 4 years ago
  
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  0415e251
Aug 17, 2020
- docker: add bash to g2gtools:0.2.8 · 62c9c2ea
  Laurent Modolo authored 4 years ago
  
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  62c9c2ea
- docker: add bash to g2gtools:0.2.7 · 45e909cd
  Laurent Modolo authored 4 years ago
  
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  45e909cd
- gffread: fix missing \ in Dockerfile · a61d4601
  Laurent Modolo authored 4 years ago
  
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  a61d4601
Jul 24, 2020
- docker: add bash to gffread:0.11.8 · 92007b4a
  Laurent Modolo authored 4 years ago
  
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  92007b4a
- docker: add gffread:0.11.8 · 48c10de5
  Laurent Modolo authored 4 years ago
  
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  48c10de5
Jul 20, 2020
- docker: add kallistobustools:0.39.3 with t2g.py · 26a87183
  Laurent Modolo authored 4 years ago
  
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  26a87183
Jul 13, 2020
- docker: add crossmap:0.4.1 · e4e83076
  Laurent Modolo authored 4 years ago
  
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  e4e83076
- docker: add ucsc:400 · 4d4b9c97
  Laurent Modolo authored 4 years ago
  
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  4d4b9c97
- docker: add bedops:2.4.39 · bda23695
  Laurent Modolo authored 4 years ago
  
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  bda23695
Jul 08, 2020
- multiqc: fix psmn config files · 8094b470
  Laurent Modolo authored 4 years ago
  
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  8094b470
Jul 07, 2020
- multiqc: add missing section in config file · 55c6c00b
  Laurent Modolo authored 4 years ago
  
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  55c6c00b
Jun 30, 2020
- Merge remote-tracking branch 'origin/master' · 11a00225
  Laurent Modolo authored 4 years ago
  
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  11a00225
- TP_experimental_biologists.md: improve lisibility · 0af18fba
  Laurent Modolo authored 4 years ago
  
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  0af18fba