Commits · 3d5118d93b36c3cdef922b7e96ce9a046e9020e6 · LBMC / nextflow

Jul 30, 2018
- fix typo in nf files · 3d5118d9
  Laurent Modolo authored 6 years ago
  
  3d5118d9
Jul 26, 2018
- Bowtie2: fix bug on nf files · 654fe7ec
  Laurent Modolo authored 6 years ago
  
  654fe7ec
- Bowtie: add nf files · 5c25d638
  Laurent Modolo authored 6 years ago
  
  5c25d638
- bowtie2.nf: improve root finding of index file name as asked by @elabaron · d0d8b68b
  Laurent Modolo authored 6 years ago
  
  d0d8b68b
Jul 25, 2018
- Cleanup SRAtoolkit files · b74bc642
  Laurent Modolo authored 6 years ago
  
  b74bc642
- MultiQC: add nf, test, and fix Dockerfile · a366ef20
  Laurent Modolo authored 6 years ago
  
  a366ef20
- Fastqc.nf: add tests · 47f170cd
  Laurent Modolo authored 6 years ago
  
  47f170cd
- FastQC.nf: add paired process · 6ccc5fa2
  Laurent Modolo authored 6 years ago
  
  6ccc5fa2
- FastQC/fastqc.config: update sge config · 49faa7f0
  Laurent Modolo authored 6 years ago
  
  49faa7f0
- rm Ribowave module for when it's ready · 03b4c8d0
  Laurent Modolo authored 6 years ago
  
  03b4c8d0
Jul 24, 2018
- fastqc.nf : don't save each report in a new folder · a3e3cbb0
  elabaron authored 6 years ago
  
  a3e3cbb0
- fastqc.nf : save only reports and not fastqc.gz file · 06a4d0d4
  elabaron authored 6 years ago
  
  06a4d0d4
- Add Ribowave and Fastq nf modules · f19a3ec0
  elabaron authored 6 years ago
  f19a3ec0
Jul 23, 2018
- Bowtie2/test.sh: fix nf path · 5c6080a9
  Laurent Modolo authored 6 years ago
  
  5c6080a9
Jul 13, 2018
- add pipeline Ribowave for HIV in PSMN · 424c95ff
  elabaron authored 6 years ago
  
  424c95ff
Jul 12, 2018
- add process in ribowave · b005ff34
  elabaron authored 6 years ago
  
  b005ff34
- add ribowave module · 3884efc1
  elabaron authored 6 years ago
  
  3884efc1
Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 18, 2018
- kallisto.config: update to the last kallisto version · 3d96bc33
  Laurent Modolo authored 6 years ago
  
  3d96bc33
Jun 07, 2018
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  5236de95
- bedtools.nf: fix fasta params · 39257434
  Laurent Modolo authored 6 years ago
  
  39257434
Jun 06, 2018
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  3454e1e8
- Kallisto.nf: fix paired end · 0dba9f2b
  Laurent Modolo authored 6 years ago
  
  0dba9f2b
- Kallisto.nf: fix paired name · 1c82c356
  Laurent Modolo authored 6 years ago
  
  1c82c356
- urqt.nf: improve input · a97e28f0
  Laurent Modolo authored 6 years ago
  
  a97e28f0
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored 6 years ago
  
  52d58451
- BEDtools: add tests files · b6575e65
  Laurent Modolo authored 6 years ago
  
  b6575e65
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  8aee48b9
Jun 05, 2018
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  705226a9
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  f51bf1e4
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
  View commits for tag v0.1.0 v0.1.0
  
  aac63da9
- RSEM: fix dockerfile and add nf and test files · 4d8776b9
  Laurent Modolo authored 6 years ago
  
  4d8776b9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored 6 years ago
  
  f7f61d07
- Kallisto: nf fix index for single-end · 5f4bd25b
  Laurent Modolo authored 6 years ago
  
  5f4bd25b
- Kallisto: config fix module name · 91613eea
  Laurent Modolo authored 6 years ago
  
  91613eea
Jun 04, 2018
- Kallisto: add nf and tests files · f0d5b150
  Laurent Modolo authored 6 years ago
  
  f0d5b150
- HTSeq: add nf and tests files · 072e204a
  Laurent Modolo authored 6 years ago
  
  072e204a
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  b0a4d2c1
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored 6 years ago
  
  018f08c7
- add publishDir · 5b1011f6
  Laurent Modolo authored 6 years ago
  
  5b1011f6