Commits · 123e0076e4e228716f810b922c358c526e073aaf · LBMC / nextflow

Nov 17, 2022
- add example for fastq_screen · 123e0076
  Laurent Modolo authored 2 years ago
  
  123e0076
Oct 19, 2022
- update licencing informations · 29a44149
  Laurent Modolo authored 2 years ago
  
  29a44149
Oct 06, 2022
- add sratoolkit 3 · 3b48957e
  Laurent Modolo authored 2 years ago
  
  3b48957e
Aug 23, 2022
- add trinity 2.13.2 · ea1eb2ef
  Laurent Modolo authored 2 years ago
  
  ea1eb2ef
May 24, 2022
- fastp: update to 0.23.2 · c6cb3757
  Laurent Modolo authored 2 years ago
  
  c6cb3757
May 09, 2022
- gffread: don't delete original gz · 4767397f
  Laurent Modolo authored 2 years ago
  
  4767397f
May 06, 2022
- Merge: 23ddf03 (nanopipe/master) · d5f43633
  Laurent Modolo authored 2 years ago
  
  d5f43633
Apr 28, 2022
- Close merge request #28 · 966a31ee
  Laurent Modolo authored 2 years ago
  
  966a31ee
- Merge crey02/nextflow-add_htseq to close #29 · f27bf148
  Laurent Modolo authored 2 years ago
  
  f27bf148
Apr 14, 2022
- src/nf_modules/gffread/main.nf: fix typo :58 · da99648b
  Laurent Modolo authored 3 years ago
  
  da99648b
- src/nf_modules/gffread/main.nf: fix typo :59 · cd7e4a19
  Laurent Modolo authored 3 years ago
  
  cd7e4a19
Mar 22, 2022
- gffread: fix typo :58 · 566d96a1
  Laurent Modolo authored 3 years ago
  
  566d96a1
- gffread: unzip gtf for spliced_cds process · 9db26e04
  Laurent Modolo authored 3 years ago
  
  9db26e04
- gffread: unzip input fasta · fbd31a43
  Laurent Modolo authored 3 years ago
  
  fbd31a43
- picard: add normalize_fasta process · 965d869e
  Laurent Modolo authored 3 years ago
  
  965d869e
- gffread: simplify extract cds process · 0ceb0fc5
  Laurent Modolo authored 3 years ago
  
  0ceb0fc5
- gffread: escape $ :61 · cd5218a0
  Laurent Modolo authored 3 years ago
  
  cd5218a0
- gffread: add spliced_cds process · 018a0af2
  Laurent Modolo authored 3 years ago
  
  018a0af2
Mar 14, 2022
- src/nf_modules/hisat2/main.nf: remove default parameters · 92058047
  Laurent Modolo authored 3 years ago
  
  92058047
Mar 01, 2022
- hisat2: remove samtools report · c6865206
  Laurent Modolo authored 3 years ago
  
  c6865206
- hisat2: change report file name · 170a745c
  Laurent Modolo authored 3 years ago
  
  170a745c
- hisat2: change report file name · 600ee64e
  Laurent Modolo authored 3 years ago
  
  600ee64e
Feb 28, 2022
- bedtools: change bg file to bed file · 30bc832d
  Laurent Modolo authored 3 years ago
  
  30bc832d
- src/nf_modules/hisat2/main.nf · d5cf091f
  Laurent Modolo authored 3 years ago
  
  d5cf091f
Feb 24, 2022
- Close merge request #27 · e2454d73
  Laurent Modolo authored 3 years ago
  
  e2454d73
Jan 06, 2022
- hisat2: add main.nf · b6110260
  Laurent Modolo authored 3 years ago
  
  b6110260
Nov 02, 2021
- multiqc: remove view · 49eb0ea8
  Laurent Modolo authored 3 years ago
  
  49eb0ea8
- multiqc: better handling of List as input · aaec95a6
  Laurent Modolo authored 3 years ago
  
  aaec95a6
- samtools: add compatbility with mutlqc · b87a994a
  Laurent Modolo authored 3 years ago
  
  b87a994a
- samtools and picardtools: add compatibility with mutliqc · e9175cbd
  Laurent Modolo authored 3 years ago
  
  e9175cbd
- samtools: rename flagstat log for multiqc · a7358e47
  Laurent Modolo authored 3 years ago
  
  a7358e47
- multiqc: update 1.9 -> 1.11 · bc023a73
  Laurent Modolo authored 3 years ago
  
  bc023a73
- multiqc: remove view · fd6c4ae7
  Laurent Modolo authored 3 years ago
  
  fd6c4ae7
- mutliqc.nf: fix flatten procedure · a92d2e02
  Laurent Modolo authored 3 years ago
  
  a92d2e02
Oct 26, 2021
- danpos: fix typo :164 · f8dba601
  Laurent Modolo authored 3 years ago
  
  f8dba601
- danpos: fix typo :153 · ffc99bdc
  Laurent Modolo authored 3 years ago
  
  ffc99bdc
- danpos: include bigwig_to_wig :6 · 0acd330e
  Laurent Modolo authored 3 years ago
  
  0acd330e
- danpos: rename dpos_bw_no_b :153 · 0021af6c
  Laurent Modolo authored 3 years ago
  
  0021af6c
- danpos: add dpos_bw_no_b process · f1a4012f
  Laurent Modolo authored 3 years ago
  
  f1a4012f
- danpos: add -b to dpos_wig · f8760e45
  Laurent Modolo authored 3 years ago
  
  f8760e45