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Verified Commit e79307f2 authored by Laurent Modolo's avatar Laurent Modolo
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switch from charliecloud to podman

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with 5 additions and 7 deletions
src/nextflow.config
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...@@ -35,10 +35,9 @@ profiles { ...@@ -35,10 +35,9 @@ profiles {
} }
} }
} }
charliecloud { podman {
charliecloud.enabled = true podman.enabled = true
charliecloud.cacheDir = "./bin/" podman.cacheDir = "./bin/"
charliecloud.runOptions = "--bind /Xnfs:/Xnfs --bind /scratch:/scratch"
process { process {
errorStrategy = 'finish' errorStrategy = 'finish'
memory = '16GB' memory = '16GB'
...@@ -81,9 +80,8 @@ profiles { ...@@ -81,9 +80,8 @@ profiles {
} }
} }
psmn { psmn {
charliecloud.enabled = true podman.enabled = true
charliecloud.cacheDir = "/Xnfs/abc/charliecloud/" podman.cacheDir = "/Xnfs/abc/podman/"
charliecloud.runOptions = "--bind /Xnfs:/Xnfs --bind /scratch:/scratch"
process{ process{
errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' } errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
maxRetries = 3 maxRetries = 3
......
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