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Verified Commit e491cdc7 authored by Laurent Modolo's avatar Laurent Modolo
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fastqdump: fix singularity image name

parent 3c7e5740
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...@@ -13,7 +13,7 @@ profiles { ...@@ -13,7 +13,7 @@ profiles {
singularity.enabled = true singularity.enabled = true
process { process {
withName: split_bam { withName: split_bam {
container = "file://bin/sambamba:0.6.7.img" container = "file://bin/sratoolkit:2.8.2.img"
cpus = 1 cpus = 1
} }
} }
...@@ -53,7 +53,7 @@ profiles { ...@@ -53,7 +53,7 @@ profiles {
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: fastq_dump { withName: fastq_dump {
container = "/sps/lbmc/common/singularity/sambamba:0.6.7.img" container = "/sps/lbmc/common/singularity/sratoolkit:2.8.2.img"
scratch = true scratch = true
stageInMode = "copy" stageInMode = "copy"
stageOutMode = "rsync" stageOutMode = "rsync"
......
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