Commits · e491cdc770b060574c5f4c7272a920f83a38670b · LBMC / nextflow · GitLab

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May 28, 2019
- fastqdump: fix singularity image name · e491cdc7
  Laurent Modolo authored 5 years ago
  
  e491cdc7
- multiqc: singularity fix env variable problem · 3c7e5740
  Laurent Modolo authored 5 years ago
  
  3c7e5740
- multiqc: add missing singulairy test · 6a330a3a
  Laurent Modolo authored 5 years ago
  
  6a330a3a
May 23, 2019
- CHANGELOG: add v0.3.0 · d72cbbf1
  Laurent Modolo authored 5 years ago
  
  d72cbbf1
May 22, 2019
- nextflow.pbs: give a hint that the results folder should be a parameter · bbc6d352
  Laurent Modolo authored 5 years ago
  
  of the pipe
  v0.3.0
  
  bbc6d352
- nextflow.pbs: fix pbs example · e25a64b9
  Laurent Modolo authored 5 years ago
  
  e25a64b9
- singularity r: add ps to debian container · 0bb0525d
  Laurent Modolo authored 5 years ago
  
  0bb0525d
- clarify example.pbs · 8d5f0314
  Laurent Modolo authored 5 years ago
  
  8d5f0314
May 21, 2019
- singularity modules: add r.3.5.3 · 8a6217da
  Laurent Modolo authored 5 years ago
  
  8a6217da
- singularity: add ps command to debian containers · 9f50974d
  Laurent Modolo authored 5 years ago
  
  9f50974d
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- singularity modules: fix typo in .def files · f3591b54
  Laurent Modolo authored 5 years ago
  
  f3591b54
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
- singularity modules: add /sps /pbs and /scratch for ccin2p3 · 9737cccf
  Laurent Modolo authored 5 years ago
  
  9737cccf
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
  b6101c65
- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
  854a1709
- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 5 years ago
  
  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 5 years ago
  
  b7d9581d
- kallisto_index.php: fix fasta path · 00019115
  Laurent Modolo authored 5 years ago
  
  00019115
- kallisto_index.pbs: update pbs · 2568b430
  Laurent Modolo authored 5 years ago
  
  2568b430
- update kalliso pbs for in2p3 test · 99dec62b
  Laurent Modolo authored 5 years ago
  
  99dec62b
- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 5 years ago
  
  803af8b7
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
  21a8f8b8
May 16, 2019
- R: dockerfile add make dependencies and git · 8bcae2bf
  Laurent Modolo authored 5 years ago
  
  8bcae2bf
May 15, 2019
- Urqt: fix singularity def file · c19f01b3
  Laurent Modolo authored 5 years ago
  
  c19f01b3
- improve comment of nextflow.pbs · 80a16578
  Laurent Modolo authored 5 years ago
  
  80a16578
- update condata package list · 0383fbc4
  Laurent Modolo authored 5 years ago
  
  0383fbc4
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  565ffad2
May 14, 2019
- conda_packages.sh: add r3.5.1 · 8b4dbd24
  Laurent Modolo authored 5 years ago
  
  8b4dbd24
May 10, 2019
- update sambamba to 0.6.9 · 3cd89d35
  Laurent Modolo authored 5 years ago
  
  3cd89d35
- src/conda_packages.sh: add python3.7 · dc613795
  Laurent Modolo authored 5 years ago
  
  dc613795
May 09, 2019
- conda_packages.sh: fix conda install cmd · 68862d6a
  Laurent Modolo authored 5 years ago
  
  68862d6a
- conda_packages.sh: fix install_env function · 69ac9343
  Laurent Modolo authored 5 years ago
  
  69ac9343
- conda_packages.sh: add R and python env · e86790b7
  Laurent Modolo authored 5 years ago
  
  e86790b7