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Verified Commit c75f1dda authored by Laurent Modolo's avatar Laurent Modolo
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nf_modules: fix bug in variable names for samtools and bwa

parent fdb5acb8
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...@@ -23,7 +23,7 @@ samtools faidx ${params.index_fasta} ${fasta} ...@@ -23,7 +23,7 @@ samtools faidx ${params.index_fasta} ${fasta}
} }
params.filter_bam_quality_threshold = 30 params.filter_bam_quality_threshold = 30
params.filter_bam_quality = "-q ${filter_bam_quality_threshold}" params.filter_bam_quality = "-q ${params.filter_bam_quality_threshold}"
params.filter_bam_quality_out = "" params.filter_bam_quality_out = ""
process filter_bam_quality { process filter_bam_quality {
container = "${container_url}" container = "${container_url}"
......
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